PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008246442.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NF-YB
Protein Properties Length: 178aa    MW: 19906.3 Da    PI: 5.0843
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008246442.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB1542.7e-48398297
           NF-YB  2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97
                     eqd +lPianv+rimk++lP++akisk+ak+ +qec++ef+sfvt+easdkc++e+rkt+ngdd++wal+ lGf++y+++   yl+kyre+e++k
  XP_008246442.1  3 DEQDGLLPIANVGRIMKQILPQRAKISKEAKQRMQECATEFLSFVTAEASDKCHKENRKTVNGDDICWALSALGFDNYAQATIRYLHKYREAERDK 98
                    69********************************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.2E-462111IPR009072Histone-fold
SuperFamilySSF471138.85E-365113IPR009072Histone-fold
PfamPF008082.1E-24972IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006158.8E-163654No hitNo description
PRINTSPR006158.8E-165573No hitNo description
PRINTSPR006158.8E-167492No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MVDEQDGLLP IANVGRIMKQ ILPQRAKISK EAKQRMQECA TEFLSFVTAE ASDKCHKENR  60
KTVNGDDICW ALSALGFDNY AQATIRYLHK YREAERDKAA ANANNNNQNK AADIIIMSRG  120
QDMNDIGDRA ASIYMASEQG LQVGEQTQTP DLEFRMLEKG DGTKPSVDQE HNLLSNNV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B7e-39293192Transcription factor HapC (Eurofung)
4g92_B7e-39293192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008246442.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008246442.11e-132PREDICTED: nuclear transcription factor Y subunit B-4
SwissprotO040271e-52NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBLA0A251NYR71e-110A0A251NYR7_PRUPE; Uncharacterized protein
STRINGXP_008246442.11e-131(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.12e-53nuclear factor Y, subunit B4
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]