PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009101279.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 264aa    MW: 29521 Da    PI: 7.9341
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009101279.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.65.2e-323184255
         G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                    prlrWtpeLH++F++av+ LGG+++AtPk il++m+v gLt++hvkSHLQ+YR 
  XP_009101279.1 31 PRLRWTPELHRCFLNAVDMLGGQHRATPKLILKMMDVRGLTISHVKSHLQMYRG 84
                    8****************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.2E-292784IPR009057Homeodomain-like
PROSITE profilePS5129414.2292787IPR017930Myb domain
TIGRFAMsTIGR015572.4E-243184IPR006447Myb domain, plants
SuperFamilySSF466891.97E-153183IPR009057Homeodomain-like
PfamPF002492.1E-93283IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MGTCGGRNGN DVGFNGHGGG RVRPYVRSPV PRLRWTPELH RCFLNAVDML GGQHRATPKL  60
ILKMMDVRGL TISHVKSHLQ MYRGSKLTLG KSEESSLSSI RRRQDTEEDY LHDNLSLPSR  120
NDCLLGFHSF PLSSHSSLSL LWHRGGRREN QTSQSGGGDD DDDFLHIINM EKTKETTAFP  180
SHQCHKKTEK EKNKWENSGK EQEEEDLSLS LSLNHHQWRS NGSSVSETSE AVSTCSAPFV  240
FKDCFASSPK IDLNLTLSVS LLSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A7e-193286357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B7e-193286357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C7e-193286357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D7e-193286357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009101279.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM2229245e-66HM222924.1 Thellungiella parvula phosphatase, cyclin J18, clathrin assembly protein-related protein, BPC1, SGR5/ATIDD15, leucine-rich receptor kinase, endomemebrane protein 70, salt overly sensitive 1, glutamate decarboxylae 4, oligopeptide transport protein, peptide transporter, and NADH-ubiquinone oxidoreductase B18 genes, complete cds; and unknown genes.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009101279.10.0PREDICTED: putative Myb family transcription factor At1g14600 isoform X1
SwissprotQ700D93e-76MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBLM4E7T01e-173M4E7T0_BRARP; Uncharacterized protein
STRINGBra024836.1-P1e-173(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46941852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.11e-42G2-like family protein