PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009101548.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 221aa    MW: 23947 Da    PI: 7.1602
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009101548.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.83.9e-0585107123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC+ CgksF++   L  H  +H
  XP_009101548.1  85 YKCSVCGKSFPSYQALGGHKTSH 107
                     9***********99998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.18E-984107No hitNo description
Gene3DG3DSA:3.30.160.602.6E-485107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.78385112IPR007087Zinc finger, C2H2
PfamPF139121.3E-1485109IPR007087Zinc finger, C2H2
SMARTSM003550.002285107IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
SuperFamilySSF576671.18E-9142169No hitNo description
PfamPF139124.5E-12146171IPR007087Zinc finger, C2H2
SMARTSM003550.35147169IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.12147169IPR007087Zinc finger, C2H2
PROSITE patternPS000280149169IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MALDTLNSPN STTTAPSPFL TEPENLEPWT KRKRTKRHRI DDKSNPPSEE EYLALCLLML  60
ARGSSDDDHH SSPPPPPSDH HHRDYKCSVC GKSFPSYQAL GGHKTSHRKP VSNNNNNHDD  120
NNNSGNGSIT NNGNISNGLI GQSGKTHKCS ICFKSFPSGQ ALGGHKRCHY DGGNSNSNIN  180
GNGSNSHGFD LNLPADQVFE VSCDETLGKS QLSGEETKSP L
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in roots and at lower levels in leaves and stems. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009101548.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009101548.11e-162PREDICTED: zinc finger protein AZF1-like
RefseqXP_013672331.11e-162zinc finger protein AZF1-like isoform X1
SwissprotQ9SSW13e-65AZF1_ARATH; Zinc finger protein AZF1
TrEMBLA0A398ARE51e-160A0A398ARE5_BRACM; Uncharacterized protein
TrEMBLM4EMG51e-160M4EMG5_BRARP; Uncharacterized protein
STRINGBra029985.1-P1e-161(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31212264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.12e-73C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]