PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009101599.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 299aa    MW: 33735 Da    PI: 6.7078
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009101599.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.84.3e-07151193341
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqck 41 
                       W++eE e+l++   +++ g   +W+++a+ +g k +t++ +k
   XP_009101599.1 151 EWSEEEMEILKKQLVKHPAGkpgRWEAVAAAFGgKYKTENVIK 193
                      7********************************9989988766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007179.2E-4148201IPR001005SANT/Myb domain
CDDcd001670.00168151185No hitNo description
SuperFamilySSF466895.77E-6151188IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-4151194IPR009057Homeodomain-like
PROSITE profilePS500905.227152185IPR017877Myb-like domain
SMARTSM007176.1E-4237290IPR001005SANT/Myb domain
SuperFamilySSF466895.3E-7239290IPR009057Homeodomain-like
CDDcd001670.00561240288No hitNo description
PROSITE profilePS500906.098241288IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MEFYDEDKPR FVFQSRPSSS RRKTDDEEEE DHKAPSKIFI SISVVISLLT LSLSFFYFES  60
EPAQSLLLWL AISFLVGPFA PPPLTGGKIR VGYGQILEPE EIKEEHSTDN ERESRRNKRS  120
SKVTKSEKPP ENPHPVKVDR DRSEIHGSVK EWSEEEMEIL KKQLVKHPAG KPGRWEAVAA  180
AFGGKYKTEN VIKKAKEIGE KKVYESDDYA QFLKNRKASS SDPRLGEEEE EEDAGGDEET  240
WSNGEDIALL NALKAFPKEA AMRWEKVAAA VPGKKSKAAC MKRVTELKKG FRSSKSGAN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.31520.0flower| leaf| root| silique
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of root hair development, possibly through auxin signaling. Its endoplasmic reticulum membrane localization is not compatible with its transcription factor activity in the nucleus. May be cleaved to target the nucleus. {ECO:0000269|PubMed:21477080}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009101599.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21477080}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0181134e-42AB018113.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MFC19.
GenBankAF3673454e-42AF367345.1 Arabidopsis thaliana AT5g45420/MFC19_9 mRNA, complete cds.
GenBankAK1174674e-42AK117467.1 Arabidopsis thaliana At5g45420 mRNA for unknown protein, complete cds, clone: RAFL17-08-A22.
GenBankAY0748394e-42AY074839.1 Arabidopsis thaliana AT5g45420/MFC19_9 mRNA, complete cds.
GenBankCP0026884e-42CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009101599.10.0PREDICTED: dnaJ homolog subfamily C member 2-like
SwissprotQ9ASQ21e-130MAMYB_ARATH; Transcription factor MAMYB
TrEMBLM4E8H20.0M4E8H2_BRARP; Uncharacterized protein
STRINGBra025078.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM126921011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.11e-112MYB_related family protein