PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009101773.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 238aa    MW: 27575.4 Da    PI: 10.0003
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009101773.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.42.9e-0988136155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r+r h + Er RR++ ++++  L++llP        K +K +i+ekAv+ I++L+
  XP_009101773.1  88 RCRRHMMKERTRREKQKQSYLALQSLLPAT------KSDKNSIVEKAVDQIRKLE 136
                     6788*************************9......788888**********995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-1185150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.87E-986140No hitNo description
PROSITE profilePS5088810.62687135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-888153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-688136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-793141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MDFFSLDSVF QEEGENFWDM IAGDVSGDGD GDKTVGVPNR SAFRSYVRDH EQRRVSSSST  60
VNVKRRMVNL LRKNWEEKKI VAVPGKERCR RHMMKERTRR EKQKQSYLAL QSLLPATKSD  120
KNSIVEKAVD QIRKLEGLKK ELERKMNVLE AKSARDHDEM NGKKVRFNVQ EPLSGIDSVV  180
EVLQCLKSMG TNLNTVQANF SPHEFSATMN IETQIRGEEV EKRVQKRLQE TEWKLLLF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009101773.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894020.0AC189402.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB057L05, complete sequence.
GenBankAC1895910.0AC189591.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH013D23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009101773.11e-176PREDICTED: transcription factor bHLH92
RefseqXP_022570422.11e-176transcription factor bHLH92-like
SwissprotQ9FIX51e-109BH092_ARATH; Transcription factor bHLH92
TrEMBLA0A078G7731e-175A0A078G773_BRANA; BnaA06g36620D protein
STRINGBra033690.1-P1e-141(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96022537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.11e-106bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]