PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009101792.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SBP
Protein Properties Length: 478aa    MW: 53466.6 Da    PI: 8.0308
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009101792.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.82e-40223298277
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                     CqvegC+ dls+ak+yhr+h++Ce hsk p+v+vsg+e+rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk++
  XP_009101792.1 223 CQVEGCNLDLSSAKDYHRKHRICENHSKFPKVVVSGVERRFCQQCSRFHCLSEFDEKKRSCRRRLSDHNARRRKPN 298
                     **************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.4E-33216284IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.795220297IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.19E-38221301IPR004333Transcription factor, SBP-box
PfamPF031103.9E-31223296IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MVKEGPYFLK DYAPTNSMNV NYWVHLRERS TSFFRFWCFS VCMECNAKPS LQWEWDNLIS  60
FGTSSAEIPK KQRPMDWEND GFDCTTFYSS SFATEAAYGG GSSGSDLAHA FSKSSKSTSI  120
SSSSAEVRTY NFTSEAGESV PPGELGSSEE FAMGIDASPS LELSFGSGDP VLGLKLGKRT  180
YFEDFWEVEN AKGSALPVSL ASSSASPVKK SKTLSQKLQT PHCQVEGCNL DLSSAKDYHR  240
KHRICENHSK FPKVVVSGVE RRFCQQCSRF HCLSEFDEKK RSCRRRLSDH NARRRKPNPG  300
RTYDGKQQMD FVWNRFALIH PRSEENFLWP NPKPVSSRGL LQEPAKTEMP NKLFTEHCGF  360
GLLDPKTKTT RAELFSKDLL EKVTISSSHM GASQDLDGAL SLLSNSTPWV SSNQPTRFSL  420
NHHSTSNLQP VVHGSVTQLS SVSSYWQPDP PAAEGSTALT RNGVGQFNEN YNLNQFYN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-262232961184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1278295KKRSCRRRLSDHNARRRK
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed constitutively during plant development, weak increase during flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:14573523}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009101792.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157 (Probable). Up-regulated by Turnip mosaic virus P1/HC-Pro protein, that acts as an antagonist of miR156. {ECO:0000269|PubMed:12202040, ECO:0000269|PubMed:12586064, ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894130.0AC189413.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB061E18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009101792.10.0PREDICTED: squamosa promoter-binding-like protein 2 isoform X2
SwissprotQ9S8400.0SPL2_ARATH; Squamosa promoter-binding-like protein 2
TrEMBLA0A397Z5420.0A0A397Z542_BRACM; Uncharacterized protein
STRINGBo7g065290.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65622644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.30.0squamosa promoter binding protein-like 2