PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009101798.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YC
Protein Properties Length: 130aa    MW: 14711 Da    PI: 10.565
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009101798.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC521.6e-166901497
           NF-YC 14 tdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97
                    +   + e+P++r+kki+k+d+d+++i +ea  l++ + elf+  l+ +s l a e+kr+t+    +  av+r + + dfl+d  p
  XP_009101798.1  6 ETTTRPEFPITRVKKIMKVDNDINKINSEALHLVTYSTELFLRFLADKSSLVAAEKKRKTVTLDHLRIAVKRHQpTRDFLLDSLP 90
                    4455779***************************************************************9976489*****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471135.99E-181197IPR009072Histone-fold
PfamPF008082.5E-191275IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.7E-191390IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MAEEEETTTR PEFPITRVKK IMKVDNDINK INSEALHLVT YSTELFLRFL ADKSSLVAAE  60
KKRKTVTLDH LRIAVKRHQP TRDFLLDSLP LPSAQPVRVT KTASEKNPPP VGTRRIDAFF  120
SKGKAKVDSP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009101798.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894130.0AC189413.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB061E18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009101798.11e-89PREDICTED: nuclear transcription factor Y subunit C-5
TrEMBLA0A397Z4U52e-88A0A397Z4U5_BRACM; Uncharacterized protein
TrEMBLM4EXX92e-88M4EXX9_BRARP; Uncharacterized protein
STRINGBra033668.1-P4e-89(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128602530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.13e-65nuclear factor Y, subunit C13