PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009101921.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

BBR-BPC

Protein Properties

Length: 262aa MW: 29552.7 Da PI: 9.4614

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009101921.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	60.6	7.2e-19	9	89	15	93
GAGA_bind 15 epaaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla....s 93 e++++l +++++ms++aerda+++ern al++k++a+a+rd+a++qrd a++er++a++er+n+l+al+++en l+ XP_009101921.1 9 EQHNALV--MNKKIMSILAERDAAVKERNEALAAKQEALAARDEALQQRDLAISERDNAIMERENALTALQHRENHLNyildC 89 4556677..99***************************************************************998854331 PP
2	GAGA_bind	247.8	7.1e-76	120	262	158	301
GAGA_bind 158 kpkekkak.kkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrr 251 ++k+kk + +kk +e+ +++ ++++ ++ ++++++ d++ln v++De+t+PvP+C+CtG+ rqCYkWGnGG qS+CCttt+S+yPLP+++++r XP_009101921.1 120 NTKRKKDRkRKKAGGEDLNRQLASPG--KKCRKDWDCNDVGLNLVTFDETTMPVPMCTCTGTARQCYKWGNGGGQSSCCTTTLSQYPLPQMPNKR 212 33444444144445667777777777..67*************************************************************** PP GAGA_bind 252 gaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 ++Ri+grKmS+++f++lL++La+eG+dls pvDLkd+WA+HGtn+++ i+ XP_009101921.1 213 HSRIGGRKMSGNVFSRLLSRLAGEGHDLSSPVDLKDYWARHGTNRYIIIK 262 *********************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	4.7E-126	1	262	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	4.6E-87	8	262	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MMPQHQIKEQ HNALVMNKKI MSILAERDAA VKERNEALAA KQEALAARDE ALQQRDLAIS 60 ERDNAIMERE NALTALQHRE NHLNYILDCA KRGGYQTCFT EETHLPNPSP LSTIPHEPPN 120 TKRKKDRKRK KAGGEDLNRQ LASPGKKCRK DWDCNDVGLN LVTFDETTMP VPMCTCTGTA 180 RQCYKWGNGG GQSSCCTTTL SQYPLPQMPN KRHSRIGGRK MSGNVFSRLL SRLAGEGHDL 240 SSPVDLKDYW ARHGTNRYII IK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	126	130	RKRKK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.20615	1e-125	bud\| root\| seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. {ECO:0000269\|PubMed:14731261}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009101921.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009101921.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE5-like
Swissprot	F4JUI3	1e-154	BPC5_ARATH; Protein BASIC PENTACYSTEINE5
TrEMBL	M4EXP6	0.0	M4EXP6_BRARP; Uncharacterized protein
STRING	Bra033583.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4090	26	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38910.1	1e-141	basic pentacysteine 5