PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009101922.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 446aa    MW: 49361.8 Da    PI: 7.7867
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009101922.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1315.4e-10300358563
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     kr +r   NR +A rs +RK  +i eLe kv++L++e ++L  +l  l+  +  l++++
  XP_009101922.1 300 KRVKRILANRQSAARSKERKMRYIVELEHKVQTLQTEATTLSAQLTLLQRDMMGLTNQN 358
                     899******************************************99998877777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003388.5E-19296360IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.76298361IPR004827Basic-leucine zipper domain
PfamPF001701.1E-8300357IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.21E-11300356No hitNo description
Gene3DG3DSA:1.20.5.1701.3E-11300357No hitNo description
CDDcd147036.64E-24301350No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MGDTDTDMIH RHHSSIPKQK HQQQQELNPN NLIRSSASQF SSESGISKRV GVPPTSPYSQ  60
IQILNPGPTT TTSHSRSMSQ PCSFFSLDSL PPLSPSPFLD DRLTNNPSSL LPPFTSSSRA  120
DSLPPRKSHR RSNSDIPTGL TSNPFVKKED MDDLFSAYMN LDNIDALNSS ENLSRDDMES  180
SRASGTKTNS DTEGETSSVN GDHNNNNLKR RAGGGDIAPS SRHYRSVSVD SCFIDKLSFP  240
DDSLKPPPSP GTTRKVSPTN SVDAAPAFSI EFNNGEFTAA EMKKIMANDK LADMAISDPK  300
RVKRILANRQ SAARSKERKM RYIVELEHKV QTLQTEATTL SAQLTLLQRD MMGLTNQNNE  360
LKFRLQSMEQ QARLRDALNE ALNGEVQRLK LAIGESSHSN EADRSKMQSL NAEMFQLLNI  420
SQLRQQQPQS QSLQNGTVST KPESNE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.28960.0bud| leaf| seed| silique
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009101922.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0808390.0AY080839.1 Arabidopsis thaliana unknown protein (At4g38900) mRNA, complete cds.
GenBankAY1504350.0AY150435.1 Arabidopsis thaliana unknown protein (At4g38900) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009101922.10.0PREDICTED: transcription factor VIP1-like
RefseqXP_009101923.10.0PREDICTED: transcription factor VIP1-like
TrEMBLM4EXP50.0M4EXP5_BRARP; Uncharacterized protein
STRINGBra033582.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42242757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.31e-157bZIP family protein