PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009102028.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 164aa    MW: 18875.9 Da    PI: 10.3068
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009102028.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind57.14.8e-1891012102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX.XXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks.Fkkgkkelle 95 
                     F   +ye+++d++l+++isws++++sfv++d++e+ +k+L+++F+ ++++ F+  L+  gF +++  e+         eF h++ F +gk el+ 
  XP_009102028.1   9 FYAGVYEVVDDPSLDSIISWSKSNKSFVIWDPKELVEKILSRFFR-NKLSQFISDLESHGFVRIEGAEH--------LEFGHEQyFVRGKPELMI 94 
                     77889***************************************8.67999*************99996........6****9989********* PP

                     XXXXXXX CS
    HSF_DNA-bind  96 kikrkks 102
                     k++rk  
  XP_009102028.1  95 KLRRKVA 101
                     ****976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.6E-24599IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.26E-18699IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.7E-20699IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000568.9E-5932IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.4E-17999IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.9E-55971IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MPWMGMSQFY AGVYEVVDDP SLDSIISWSK SNKSFVIWDP KELVEKILSR FFRNKLSQFI  60
SDLESHGFVR IEGAEHLEFG HEQYFVRGKP ELMIKLRRKV ASARVKKDIK AAKEAEKNGS  120
VGDQPPIRKM SLKDALIRFD QIMRPSKKSS KKAKAKTPLE TIDE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009102028.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009102028.11e-117PREDICTED: heat stress transcription factor A-4a-like
TrEMBLM4EMK11e-115M4EMK1_BRARP; Uncharacterized protein
STRINGBra030021.1-P1e-116(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50671450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77570.16e-24Winged helix-turn-helix transcription repressor DNA-binding