PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009102033.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 357aa    MW: 40128.2 Da    PI: 6.1608
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009102033.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like97.41e-30193247155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k r+rWtpeLHe+Fveav+qLGG e+A P ++l++mkv+gLt++hvkSHLQkYR+
  XP_009102033.1 193 KGRVRWTPELHEAFVEAVNQLGGMENAKPMAVLKHMKVQGLTIYHVKSHLQKYRT 247
                     569***************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.344190250IPR017930Myb domain
SuperFamilySSF466897.7E-17191247IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-28191248IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-21193247IPR006447Myb domain, plants
PfamPF002492.8E-9195246IPR001005SANT/Myb domain
PfamPF143798.0E-19287332IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
METRPFRSMS SLALTSSVPN PSVNADISFS SEHNQSMASP YHLLSANGGA VGHNIYSNDL  60
HNHPSMASHI GSSSDTPFIS EILDWDHPAP IPDLFDFPLD IPIQTNQMDD IHRPSELAEL  120
DEELITDDEN PLMSALLNDL FLDTSSTSAA SKVQEPTMQS QIQQPQVVLH QTSPIVRTVS  180
SNSFTSNNTA ATKGRVRWTP ELHEAFVEAV NQLGGMENAK PMAVLKHMKV QGLTIYHVKS  240
HLQKYRTARH VPEPSEAGWR EKKLTPVEHV TSLDTKRFGN ITVHNGMYIS EALRIQMEVQ  300
KQLHEQLEIQ RKMQLQIEKQ GKALVMMIEK QNMEFGKPEQ EEEAEADSRR SKRPRKG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-25193250259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-25193250259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-25193250259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-25193250259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-25193250259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-25193250259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-25193250259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-25193250259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in male gametophyte development. {ECO:0000269|PubMed:22101548}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00111ampDAPTransfer from AT2G20400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009102033.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018508824.10.0PREDICTED: myb family transcription factor PHL4 isoform X2
SwissprotQ8GXC21e-107PHL4_ARATH; Myb family transcription factor PHL4
TrEMBLM4F5W30.0M4F5W3_BRARP; Uncharacterized protein
STRINGBra036469.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85627117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20400.11e-107G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]