PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009102241.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 271aa    MW: 31307.7 Da    PI: 9.4083
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009102241.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-05208230123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+Cp+C+ +F+++  +  H+++H
  XP_009102241.1 208 YTCPKCKGVFNTSQKFAAHMSSH 230
                     9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.245208235IPR007087Zinc finger, C2H2
SMARTSM003550.0099208230IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280210230IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MVTTSDHMNH RGLFSSSPSF SCYQNSHVSS SSFGLNNSYM NYHMRSESDS VLGANCFPIT  60
NNPQYSQVSF TQTITNRFSA IVPSNQIYNI QNDIARVQHD MDFKTNMWNR PTSYRPTFLD  120
KNCGILNPKP VYAIPHQDSP YRQHLDMFSS SSKYNHDLHV LQEGQSSRKS PKPNKSHDNY  180
NSDEDGISED VQYDGRTHSL PYEKYGPYTC PKCKGVFNTS QKFAAHMSSH YKNETKKERD  240
ERYRARIKKK YHKLSNNIHG GSKKIKLETM E
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00264DAPTransfer from AT2G15740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009102241.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935483e-33AB493548.1 Arabidopsis thaliana At2g15740 gene for hypothetical protein, partial cds, clone: RAAt2g15740.
GenBankAC0062483e-33AC006248.4 Arabidopsis thaliana chromosome 2 clone F9O13 map mi398, complete sequence.
GenBankCP0026853e-33CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009102241.20.0PREDICTED: uncharacterized protein LOC103828387
TrEMBLA0A3P6AW850.0A0A3P6AW85_BRACM; Uncharacterized protein
STRINGBra039606.1-P1e-121(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19241958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G15740.15e-90C2H2-like zinc finger protein