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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_009102279.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
SRS |
| Protein Properties |
Length: 232aa MW: 26136.2 Da PI: 8.5686 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009102279.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 180.2 | 9.3e-56 | 63 | 204 | 2 | 154 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaes 96
rs t+sCqdCGnqakk+C+h+RCRtCCks+g+dC thv+stW+paakrrerqqq ++++ +++ + + s l+ +
XP_009102279.1 63 RSVTISCQDCGNQAKKGCTHMRCRTCCKSQGLDCPTHVRSTWIPAAKRRERQQQIETPTGNRNGRG-CGV----------GNIPKRSWDLPDTLD 146
67899*************************************************999866554422.222..........222233445555666 PP
DUF702 97 kkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
+ e++ + +Peevss+a frcvr+s+ ddge ++aYqt+v i+GhvfkGiLy qG+e+
XP_009102279.1 147 SPEMDGTAFPEEVSSDAHFRCVRMSGTDDGESQFAYQTTVGIAGHVFKGILYSQGPES 204
66899999************************************************86 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 232 aa
Download sequence Send
to blast |
MAGIGSSRNN EEDNQHKTNW LWYRNTVSSN TSHNNQQQIW QQQSLDLYPG QINVCDVTTS 60
SSRSVTISCQ DCGNQAKKGC THMRCRTCCK SQGLDCPTHV RSTWIPAAKR RERQQQIETP 120
TGNRNGRGCG VGNIPKRSWD LPDTLDSPEM DGTAFPEEVS SDAHFRCVRM SGTDDGESQF 180
AYQTTVGIAG HVFKGILYSQ GPESMMMPGG RTGKARMERM RWKWKWPLEG RI
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in cotyledon tips, leaf primordia, hydathodes, stipules, and lateral root primordia and weakly at the edges of petals and sepals. {ECO:0000269|PubMed:21976484}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
