PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009102404.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 483aa    MW: 54947.6 Da    PI: 7.2228
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009102404.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like95.73.5e-3074128155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+rlrW+++LH++Fv+ave+LGG++kAtPk+++++m+v+g++l+hvkSHLQk+Rl
  XP_009102404.1  74 KARLRWSSDLHACFVKAVEKLGGPDKATPKAVKDTMEVEGIALHHVKSHLQKFRL 128
                     68****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.4E-2671128IPR009057Homeodomain-like
SuperFamilySSF466898.6E-1373128IPR009057Homeodomain-like
TIGRFAMsTIGR015576.5E-2574129IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MSSQEQKKKE KGKEIVTSEE NPTTSEVSMY FSEQGIAALL EANKKDNAEK VGTQQKKSSS  60
SKIKPCIFYT SDEKARLRWS SDLHACFVKA VEKLGGPDKA TPKAVKDTME VEGIALHHVK  120
SHLQKFRLGR CNIRDETDQY HKRYRTGRRF FKAHAASNSP RPQVNIRPKV MGDVKPKKAK  180
EDHGSLYMRI EHDLNLQRCR EAERMQMAFE IEHNRKMLEA QYLQAGKAPS ITSQHRNYIS  240
TTTQRPSSQV LDQWLADHYS GRQTSDSQQP TTMIPQTTTC LPMFPLETKT TFSKYDPQHV  300
NTSTQEKRQF NNSLNYNMTQ GFINPYVTTE PQSMPGSSTV TTQPELQLND DCLIHDLYRN  360
PSFLPTSVPQ TVDSLHQVIS NITSPLSTAP QPIQTYAPNH TYNYPEYNTL ERVKAQLSAL  420
QYSSTSRIQA TPFCETNLSS SVTRDDEEDP VDMYIDWGKY EEVDIDELDP VEALLALGFS  480
VSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-1674130258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-1674130258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-1674130258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-1674130258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-1674130258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-1674130258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-1674130258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-1674130258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009102404.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009102404.10.0PREDICTED: uncharacterized protein LOC103828546
RefseqXP_022545224.10.0uncharacterized protein LOC111199430
TrEMBLA0A3P6B2I90.0A0A3P6B2I9_BRACM; Uncharacterized protein
STRINGBo7g030940.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134061520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G06020.16e-55G2-like family protein