PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009102740.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GRAS

Protein Properties

Length: 428aa MW: 48075.8 Da PI: 5.4754

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009102740.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	420.9	1.1e-128	70	428	4	372
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 +L++cA+a+s+++l laq+++ +l+ + s +g+p+qRl ay++e+L arla ++s++yk+l+++e + s + l+++ l++ev+P++kf+++ a XP_009102740.1 70 VLVACAKAISANNLLLAQWCMGELRGMISISGEPIQRLXAYMLEGLVARLATTGSSIYKSLQSREPE---SCDFLSYDYLLHEVCPYFKFGYMSA 161 79*************************************************************99...9******************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193 N aI+ea++ eer+HiiDf+i++G QW+aL+qa+++Rp+g+p++Ri g+g+ +l ++++rL+k+A++++vpf+f++ v+ + ++e e+ XP_009102740.1 162 NGAIVEAMKDEERIHIIDFEIGEGSQWVALIQAFSARPGGAPNIRIIGIGD-----GSKLVAVRRRLEKLAKKFDVPFNFHP-VSVSSCEVEAEN 250 ***********************************************.....889*******************.68889999 PP GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288 L+ + gEal Vn++++lh+l+desvs+e++rd+vL++vkslsPkvv++veqe+++n+++Fl rfle+l+yy+a+f+s+++ lpr+++eri+vE++ XP_009102740.1 251 LDARIGEALGVNFAYMLHHLPDESVSTENHRDRVLRIVKSLSPKVVTLVEQECNTNTSPFLPRFLETLSYYTAMFESIDVILPRNHKERINVEQH 345 ******************************************************************************************* PP GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372 +l+ ++vn++acegaer+erhe l+kW++r+++aGF+p+pls+ + +++++ll+ ++ +gy +ee++g+l+lgW+dr Lvs +a XP_009102740.1 346 CLASNVVNIIACEGAERIERHELLGKWKSRFSMAGFEPYPLSSVVSATIRALLKYYN-NGYGIEERDGALYLGWMDRILVSSCA 428 *************************************************9998.9*******************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	63.733	41	411	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.8E-126	70	428	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence Send to blast
MLFIVELDSY GLNCKRLEQN LRDVEAIMLQ PLPKISESXS VNHEHSIWPG DTDDLILIVD 60 AISRGDLKWV LVACAKAISA NNLLLAQWCM GELRGMISIS GEPIQRLXAY MLEGLVARLA 120 TTGSSIYKSL QSREPESCDF LSYDYLLHEV CPYFKFGYMS ANGAIVEAMK DEERIHIIDF 180 EIGEGSQWVA LIQAFSARPG GAPNIRIIGI GDGSKLVAVR RRLEKLAKKF DVPFNFHPVS 240 VSSCEVEAEN LDARIGEALG VNFAYMLHHL PDESVSTENH RDRVLRIVKS LSPKVVTLVE 300 QECNTNTSPF LPRFLETLSY YTAMFESIDV ILPRNHKERI NVEQHCLASN VVNIIACEGA 360 ERIERHELLG KWKSRFSMAG FEPYPLSSVV SATIRALLKY YNNGYGIEER DGALYLGWMD 420 RILVSSCA

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence Send to blast

MLFIVELDSY GLNCKRLEQN LRDVEAIMLQ PLPKISESXS VNHEHSIWPG DTDDLILIVD  60
AISRGDLKWV LVACAKAISA NNLLLAQWCM GELRGMISIS GEPIQRLXAY MLEGLVARLA  120
TTGSSIYKSL QSREPESCDF LSYDYLLHEV CPYFKFGYMS ANGAIVEAMK DEERIHIIDF  180
EIGEGSQWVA LIQAFSARPG GAPNIRIIGI GDGSKLVAVR RRLEKLAKKF DVPFNFHPVS  240
VSSCEVEAEN LDARIGEALG VNFAYMLHHL PDESVSTENH RDRVLRIVKS LSPKVVTLVE  300
QECNTNTSPF LPRFLETLSY YTAMFESIDV ILPRNHKERI NVEQHCLASN VVNIIACEGA  360
ERIERHELLG KWKSRFSMAG FEPYPLSSVV SATIRALLKY YNNGYGIEER DGALYLGWMD  420
RILVSSCA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	6e-59	71	428	8	373	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, roots, cotyledons, leaves and flowers. {ECO:0000269\|PubMed:18500650}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009102740.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018508387.1	0.0	PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 21
Swissprot	Q9S7H5	0.0	SCL21_ARATH; Scarecrow-like protein 21
TrEMBL	A0A3N6S252	0.0	A0A3N6S252_BRACR; Uncharacterized protein
STRING	Bo7g030310.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM621	28	141

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G04890.1	0.0	SCARECROW-like 21

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]