PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009102796.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 227aa MW: 24801.9 Da PI: 4.3645

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009102796.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.1	4.8e-06	175	211	13	54
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R+++++ + Lr+++P + ++ a+iL +Av+Y+ksL XP_009102796.1 175 RRKMKKMMGVLRRIVPGG-----EEMNTASILDEAVQYLKSL 211 899***********95.....69*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.433	162	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0017	169	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.9E-7	175	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.27E-8	175	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.60E-6	175	216	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MQNNQYPYFS DQMGDGNMNS VPYASASSFD DLFPPCAKLP FHGVELQPSS VCPKNFVVFD 60 QTYDRSQVMF HPELTPRLVN SGLASSFQNE YVAGGYGNYG QQEVSSSSSH QEDPNEIDAL 120 LSTDEDDDDD ESEDGGDSEE VSSTARNSSS GYNSSRRKQS VSGSASSSNN DGKGRRKMKK 180 MMGVLRRIVP GGEEMNTASI LDEAVQYLKS LKLEAQKLGV GHFSNQS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	155	178	RRKQSVSGSASSSNNDGKGRRKMK
2	173	181	GRRKMKKMM

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.21412	8e-64	bud\| flower\| leaf\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009102796.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353252	4e-88	AK353252.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-23-J23.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009102797.2	1e-167	PREDICTED: transcription factor bHLH144-like
Refseq	XP_018508835.1	1e-167	PREDICTED: transcription factor bHLH144-like
Swissprot	Q9ASX9	3e-97	BH144_ARATH; Transcription factor bHLH144
TrEMBL	A0A397YJ46	1e-166	A0A397YJ46_BRACM; Uncharacterized protein
TrEMBL	M4EN14	1e-166	M4EN14_BRARP; Uncharacterized protein
STRING	Bra030184.1-P	1e-166	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6195	16	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29950.2	2e-61	bHLH family protein

Publications ? help Back to Top
Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019] Cai Q, et al. The SAC51 Family Plays a Central Role in Thermospermine Responses in Arabidopsis. Plant Cell Physiol., 2016. 57(8): p. 1583-92 [PMID:27388339] Yamamoto M,Takahashi T Thermospermine enhances translation of SAC51 and SACL1 in Arabidopsis. Plant Signal Behav, 2017. 12(1): p. e1276685 [PMID:28045577]