PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009102841.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 78aa    MW: 8896.81 Da    PI: 8.9461
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009102841.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26037.66.4e-1237128100
          DUF260  28 kkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                      +++++ klFG++n+++++k + +e+++ ++ss++ e+ a++     G +gvi kl ++++ ++a l++++++
  XP_009102841.1   3 DDYEAATKLFGTQNIIRMMKLAAHEQKHLLASSILKEGAAWI----GGGYGVIXKLXWEIKLHEAYLSEIRKK 71 
                     5799*************************************5....8*********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031953.4E-8369IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
MQDDYEAATK LFGTQNIIRM MKLAAHEQKH LLASSILKEG AAWIGGGYGV IXKLXWEIKL  60
HEAYLSEIRK KISEEKNN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009102841.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013607622.13e-37PREDICTED: LOB domain-containing protein 5-like
SwissprotQ9C8V87e-20LBD5_ARATH; LOB domain-containing protein 5
TrEMBLA0A397YN259e-40A0A397YN25_BRACM; Uncharacterized protein
STRINGBo9g027690.15e-34(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122821432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G36000.13e-22LOB domain-containing protein 5