PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009102876.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 177aa    MW: 19657.4 Da    PI: 9.8834
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009102876.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.52.9e-3861119260
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 
                     ++k+++cprC+s+ tkfCy+nny+++qPr+fCk+C+ryWt+GGalrnvPvG+grr++k 
  XP_009102876.1  61 PDKIIACPRCKSMATKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRRSKP 119
                     68999***************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-2860118IPR003851Zinc finger, Dof-type
PfamPF027013.0E-3163118IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.91365119IPR003851Zinc finger, Dof-type
PROSITE patternPS01361067103IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MATKDSPGIK LFGKTITFNA NNNNIIQTIK KEEGQEQQPE LQTKIAVRSP SSSDLMAEKR  60
PDKIIACPRC KSMATKFCYF NNYNVNQPRH FCKGCQRYWT AGGALRNVPV GAGRRRSKPP  120
GRAGGFSELL GAATGAVDQV ELDALLVEEW RAGASHGFFR HDYPVKRLRC YTDGQSC
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Acts as a negative regulator in the phytochrome-mediated light responses. Controls phyB-mediated end-of-day response and the phyA-mediated anthocyanin accumulation. Not involved in direct flowering time regulation. {ECO:0000269|PubMed:19619493}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009102876.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By red or far-red light. Circadian-regulation. The transcript level rises progressively from dawn and decreases during the night. {ECO:0000269|PubMed:19619493}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009102876.11e-132PREDICTED: dof zinc finger protein DOF1.5-like
SwissprotP683501e-100DOF15_ARATH; Dof zinc finger protein DOF1.5
TrEMBLA0A078FS211e-129A0A078FS21_BRANA; BnaA07g08180D protein
TrEMBLA0A397YKR41e-129A0A397YKR4_BRACM; Uncharacterized protein
STRINGBo7g045730.11e-128(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28092669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29160.11e-92Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Bueso E, et al.
    Arabidopsis COGWHEEL1 links light perception and gibberellins with seed tolerance to deterioration.
    Plant J., 2016. 87(6): p. 583-96
    [PMID:27227784]