PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009102906.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 313aa    MW: 35367.8 Da    PI: 8.2175
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009102906.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM107.51.6e-33772211128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLp.k..kvkaeekewyfFskrdkkyatgkrknratk..... 79 
                     lp+G++F+P+d+e++  +L++kv+++k      ++++   ++   +i++++P++Lp +   v+++ +  +fF++ +k+y+tg+rk+r+++     
  XP_009102906.1  77 LPAGVKFDPSDKEIL-MHLEAKVSSDKrklyplIDEFIPtLEGEnGICYTHPEKLPvMstGVSKDGQVRHFFHRPSKAYTTGTRKRRKVStdeeg 170
                     799***********9.89*****99996776543332222443346**********4333344455566******************73334544 PP

             NAM  80 .sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                      + +W++tgk++++ls +  + g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  XP_009102906.1 171 hETRWHKTGKTRPILS-QAGVAGFKKILVLYtnYGRQKKPEKTNWVMHQYHL 221
                     4788************.8889**********6658***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-3571240IPR003441NAC domain
PROSITE profilePS5100531.94877240IPR003441NAC domain
PfamPF023651.4E-1478221IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MSWCDDSDDN YDPNLERASN IDHPSIQLKN QSQSCVTSAP DSKIIVDAPI VMTCSSCGQK  60
IHQQDEQVGS IKDLPSLPAG VKFDPSDKEI LMHLEAKVSS DKRKLYPLID EFIPTLEGEN  120
GICYTHPEKL PVMSTGVSKD GQVRHFFHRP SKAYTTGTRK RRKVSTDEEG HETRWHKTGK  180
TRPILSQAGV AGFKKILVLY TNYGRQKKPE KTNWVMHQYH LGHSEDEKDG EPVLSKVFYQ  240
TQPRQCGGST EPKPKSRVNL NRFSYENHAG FGYEHKGKNE ENTQVIREGD VSCSFLSFTC  300
DASKGKESFM KKI
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269|PubMed:18952777}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009102906.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7382670.0KF738267.1 Brassica napus NAC transcription factor 10-1 (NAC10-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009102906.10.0PREDICTED: NAC domain-containing protein 10-like isoform X1
SwissprotF4HY610.0NAC10_ARATH; NAC domain-containing protein 10
TrEMBLA0A397YQT90.0A0A397YQT9_BRACM; Uncharacterized protein
STRINGBra030099.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20122881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28470.10.0NAC domain containing protein 10