PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009102912.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 168aa    MW: 18719 Da    PI: 9.9734
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009102912.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2651.5e-202273156
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    ++y+GVr ++ +gr++AeIrdp++   ++r++lg+f+t+e Aa+a+++a+++++g+
  XP_009102912.1 22 TRYRGVRKRP-WGRYAAEIRDPYK---KTRVWLGTFDTPEAAARAYDRAALRFRGA 73
                    68********.**********765...6*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.88E-222282No hitNo description
PfamPF008478.1E-142272IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-232381IPR016177DNA-binding domain
SMARTSM003801.5E-352386IPR001471AP2/ERF domain
PROSITE profilePS5103224.6322380IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-312381IPR001471AP2/ERF domain
PRINTSPR003676.1E-112435IPR001471AP2/ERF domain
PRINTSPR003676.1E-114662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MAPTVKTAVV NTNGGDGGIK ETRYRGVRKR PWGRYAAEIR DPYKKTRVWL GTFDTPEAAA  60
RAYDRAALRF RGAKAKTNFP YTYMVDNNES PTQSSTVESS SIPDLNLGSV GSKFPFPKVQ  120
VKPGMILFDE ESTRSESDSS SVVMDRSPDR RSRVLLDLDL NLPPKPED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-231383375Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.10370.0bud| flower| leaf| root
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009102912.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009102912.11e-120PREDICTED: ethylene-responsive transcription factor 11-like
SwissprotQ9C5I32e-57ERF76_ARATH; Ethylene-responsive transcription factor 11
TrEMBLA0A397YN841e-118A0A397YN84_BRACM; Uncharacterized protein
TrEMBLM4EMS51e-118M4EMS5_BRARP; Uncharacterized protein
STRINGBra030095.1-P1e-119(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.11e-41ERF domain protein 11
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dubois M, et al.
    The ETHYLENE RESPONSE FACTORs ERF6 and ERF11 Antagonistically Regulate Mannitol-Induced Growth Inhibition in Arabidopsis.
    Plant Physiol., 2015. 169(1): p. 166-79
    [PMID:25995327]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Zhou X, et al.
    The ERF11 Transcription Factor Promotes Internode Elongation by Activating Gibberellin Biosynthesis and Signaling.
    Plant Physiol., 2016. 171(4): p. 2760-70
    [PMID:27255484]