PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009103044.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 295aa    MW: 32590.5 Da    PI: 7.1084
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009103044.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2569.5e-1857107256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                     +y+GVr+++ +gr++AeIrdp     +  r +lg+f+taeeAa a++ a+++++g+
  XP_009103044.1  57 RYRGVRRRP-WGRYAAEIRDPM----SkERRWLGTFDTAEEAACAYDCAARAMRGH 107
                     59*******.**********84....35999***********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.91857114IPR001471AP2/ERF domain
PfamPF008473.7E-1157107IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-2157114IPR016177DNA-binding domain
CDDcd000189.60E-3057113No hitNo description
Gene3DG3DSA:3.30.730.101.7E-2957113IPR001471AP2/ERF domain
SMARTSM003802.4E-3357120IPR001471AP2/ERF domain
PRINTSPR003671.4E-95869IPR001471AP2/ERF domain
PRINTSPR003671.4E-98096IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MDEAIMRLEG AEHRETNNHS LKRKPSRTSS TAPCSPGGVP TAKSVPGAGA SGGTTIRYRG  60
VRRRPWGRYA AEIRDPMSKE RRWLGTFDTA EEAACAYDCA ARAMRGHKAR TNFVYPIPSL  120
DSYHHRIFSS PPMNMFLRGD VLNSQSLSPF AYPLSNVSGP VYDSFANVND VSEDHSPKAK  180
RFSTFDNESM ISILEPEPAG SGLLQEIVQG FLPKPIPQQA ATPPTTIGVF PTMLETGFQS  240
EFRLPDHVNV EGNGFGQLKY HGELGWVDHE GGFDSAKMHQ NGNAGMLYQY CFHDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1947113771Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First observed in the embryo at globular stage in cotyledons primordia and later confined to cotyledons tips and shoot apical meristem. Also detected in emerging leaf primordia. {ECO:0000269|PubMed:17056621, ECO:0000269|PubMed:17376809}.
UniprotTISSUE SPECIFICITY: Cotyledons, leaf primordia and shoot apical meristems. {ECO:0000269|PubMed:17056621, ECO:0000269|PubMed:17376809}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for correct embryo patterning and cotyledon organogenesis. May regulate positively the gibberellin signaling pathway leading to germination, hypocotyl elongation, and leaf expansion. Involved in the cytokinin signaling pathway that promotes shoot regeneration, probably through transcriptional activation of target genes such as CUC1. Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16339853, ECO:0000269|PubMed:17056621, ECO:0000269|PubMed:17376809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009103044.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009103044.10.0PREDICTED: ethylene-responsive transcription factor ESR2-like
SwissprotQ9FYK51e-166ESR2_ARATH; Ethylene-responsive transcription factor ESR2
TrEMBLA0A397YU610.0A0A397YU61_BRACM; Uncharacterized protein
TrEMBLM4D7N90.0M4D7N9_BRARP; Uncharacterized protein
STRINGBra012499.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73552541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.11e-134DORNROSCHEN-like
Publications ? help Back to Top
  1. Chandler JW,Werr W
    Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation.
    J. Exp. Bot., 2014. 65(12): p. 3097-110
    [PMID:24744428]
  2. Thoma R,Chandler JW
    Polarity in the early floral meristem of Arabidopsis.
    Plant Signal Behav, 2015. 10(4): p. e992733
    [PMID:25806573]
  3. Comelli P,Glowa D,Chandler JW,Werr W
    Founder-cell-specific transcription of the DORNRÖSCHEN-LIKE promoter and integration of the auxin response.
    J. Exp. Bot., 2016. 67(1): p. 143-55
    [PMID:26428063]
  4. Seeliger I, et al.
    The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  5. Chandler JW,Werr W
    DORNRÖSCHEN, DORNRÖSCHEN-LIKE, and PUCHI redundantly control floral meristem identity and organ initiation in Arabidopsis.
    J. Exp. Bot., 2017. 68(13): p. 3457-3472
    [PMID:28859377]
  6. Durán-Medina Y,Serwatowska J,Reyes-Olalde JI,de Folter S,Marsch-Martínez N
    The AP2/ERF Transcription Factor DRNL Modulates Gynoecium Development and Affects Its Response to Cytokinin.
    Front Plant Sci, 2017. 8: p. 1841
    [PMID:29123539]