PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009103209.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 147aa    MW: 16080.3 Da    PI: 10.6569
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009103209.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-1867125155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ng.kr...krfslgkfgtaeeAakaaiaarkkleg 55 
                     ++++GVr+++  g+W+AeIr+ +  +g ++    r +lg+f taeeAa a+++a+ +l g
  XP_009103209.1  67 KKIRGVRQRP-GGKWAAEIRCGKAhGGiRNggpVRLWLGTFETAEEAALAYDKAAIRLIG 125
                     599*******.9*********77755585578*************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381234.1E-331145IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000185.02E-2367132No hitNo description
SMARTSM003807.3E-2668139IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-1768133IPR016177DNA-binding domain
PROSITE profilePS5103219.82368133IPR001471AP2/ERF domain
PfamPF008474.1E-1268125IPR001471AP2/ERF domain
PRINTSPR003675.3E-96980IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-2370133IPR001471AP2/ERF domain
PRINTSPR003675.3E-999115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MKRVVRISFT DVEATDSSSS EDDQTNTESP SPRKGKRFVK EIVIDPSDSA EVRKTRFKIR  60
IPARLTKKIR GVRQRPGGKW AAEIRCGKAH GGIRNGGPVR LWLGTFETAE EAALAYDKAA  120
IRLIGPHAPI NFGPESPAVK QDSVAGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1667132462ATERF1
3gcc_A1e-1667132462ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009103209.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009103209.11e-103PREDICTED: ethylene-responsive transcription factor ERF069
SwissprotQ9C9952e-54ERF70_ARATH; Ethylene-responsive transcription factor ERF070
TrEMBLM4D7921e-102M4D792_BRARP; Uncharacterized protein
STRINGBra012352.1-P1e-102(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40002359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71130.17e-48ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]