PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009103218.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 148aa    MW: 15924.6 Da    PI: 6.661
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009103218.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.99.3e-17858155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    s+ykG+r++k +g+Wv+eIr+p +   r r +lg+f tae+Aa a++ a  +l++
  XP_009103218.1  8 SKYKGIRRRK-WGKWVSEIRVPGT---RDRLWLGSFSTAEGAAVAHDVAFYCLHQ 58
                    89*****998.**********943...5*********************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.16E-17869IPR016177DNA-binding domain
PfamPF008471.5E-8856IPR001471AP2/ERF domain
CDDcd000186.80E-28870No hitNo description
SMARTSM003801.5E-30974IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-25969IPR001471AP2/ERF domain
PROSITE profilePS5103221.351968IPR001471AP2/ERF domain
PRINTSPR003677.0E-91021IPR001471AP2/ERF domain
PRINTSPR003677.0E-93248IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MDCSESQSKY KGIRRRKWGK WVSEIRVPGT RDRLWLGSFS TAEGAAVAHD VAFYCLHQPN  60
SLESLNFPHL LPPYIASNNT SPRSIQQAAS NAGMAVDAGI VNSNGVSGNS GCGDTTAYCG  120
NGGGVVEPLN ISVYDYLDGH EHVWSSSF
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00158DAPTransfer from AT1G22810Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009103218.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009103218.11e-108PREDICTED: ethylene-responsive transcription factor ERF019-like
SwissprotO805424e-80ERF19_ARATH; Ethylene-responsive transcription factor ERF019
TrEMBLM4D7851e-106M4D785_BRARP; Uncharacterized protein
STRINGBra012345.1-P1e-107(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38652860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22810.14e-77ERF family protein
Publications ? help Back to Top
  1. Scarpeci TE,Frea VS,Zanor MI,Valle EM
    Overexpression of AtERF019 delays plant growth and senescence, and improves drought tolerance in Arabidopsis.
    J. Exp. Bot., 2017. 68(3): p. 673-685
    [PMID:28204526]