PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009103220.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 509aa    MW: 56808 Da    PI: 5.1304
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009103220.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM154.45e-48161421128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     l+pGfrFhPtdeelvv+yLk+k+++kkl++  +i e+d+yk++P++Lp k  +++++++w+fFs+rd+k+ +g r++rat++gyWkatg d+ ++
  XP_009103220.1  16 LAPGFRFHPTDEELVVYYLKRKIRRKKLRV-AAIGETDVYKFDPEELPgKaLHNTGDRQWFFFSPRDRKQ-HGGRSSRATDRGYWKATGVDRIIK 108
                     579***************************.88***************6434556889**********97.699********************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + +++ vg kktLvf++grapkge+tdWvmhey+l
  XP_009103220.1 109 C-SSRPVGEKKTLVFHRGRAPKGERTDWVMHEYTL 142
                     9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.2E-5512165IPR003441NAC domain
PROSITE profilePS5100553.04916165IPR003441NAC domain
PfamPF023651.8E-2618142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010114Biological Processresponse to red light
GO:0010224Biological Processresponse to UV-B
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:1900409Biological Processpositive regulation of cellular response to oxidative stress
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
METSRRGSCR AGDRVLAPGF RFHPTDEELV VYYLKRKIRR KKLRVAAIGE TDVYKFDPEE  60
LPGKALHNTG DRQWFFFSPR DRKQHGGRSS RATDRGYWKA TGVDRIIKCS SRPVGEKKTL  120
VFHRGRAPKG ERTDWVMHEY TLHKEELEKC GDVKDNYVLY KIFKKSGSGP KNGEHYGAPF  180
VEEEWAEEDD EVDEADAVHV PTNQLMVSAC LGSNNNIWAD GGLNQSELNE NDIQELMRQV  240
SEETGVNSHV ANNNPVNLAE DEYLEIDDLL LPGPEPSYVD KEGSAVLNDN DFFDVDSYIG  300
DFDATNPQSE PVGVGLNNGV VQSLPVIDQA NSNQFQQQTW KNQDSNWPLR NSYTRKISSE  360
SWRDDEVTVC RYGEAPGTVD ASELINPITS GISITKGEEA TKDESSQFSS SVWSFLESIP  420
ASPAFASENP IVNLNIVRIS SLGGRYRFGS KSTSSNVVIA VNDSEAKRNK SGGNNKKNNH  480
KGFFCLSIIG ALCALSWVMM GVSGRSLLW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-441617117171NO APICAL MERISTEM PROTEIN
1ut4_B3e-441617117171NO APICAL MERISTEM PROTEIN
1ut7_A3e-441617117171NO APICAL MERISTEM PROTEIN
1ut7_B3e-441617117171NO APICAL MERISTEM PROTEIN
3swm_A3e-441617120174NAC domain-containing protein 19
3swm_B3e-441617120174NAC domain-containing protein 19
3swm_C3e-441617120174NAC domain-containing protein 19
3swm_D3e-441617120174NAC domain-containing protein 19
3swp_A3e-441617120174NAC domain-containing protein 19
3swp_B3e-441617120174NAC domain-containing protein 19
3swp_C3e-441617120174NAC domain-containing protein 19
3swp_D3e-441617120174NAC domain-containing protein 19
4dul_A3e-441617117171NAC domain-containing protein 19
4dul_B3e-441617117171NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13643KIRRKKLR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, rosette leaves, shoot apex, stems and flowers. {ECO:0000269|PubMed:17158162}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in oxidative stress tolerance by mediating regulation of mitochondrial retrograde signaling during mitochondrial dysfunction. Interacts directly with the mitochondrial dysfunction DNA consensus motif 5'-CTTGNNNNNCA[AC]G-3', a cis-regulatory elements of several mitochondrial retrograde regulation-induced genes, and triggers increased oxidative stress tolerance. {ECO:0000269|PubMed:24045019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00176DAPTransfer from AT1G32870Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009103220.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat, salt stress, abscisic acid (ABA) and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9747560.0KF974756.1 Brassica napus NAC transcription factor 13-1 (NAC13-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001302970.10.0NAC domain-containing protein 13
RefseqXP_009103220.10.0PREDICTED: NAC domain-containing protein 13 isoform X1
SwissprotF4IED20.0NAC13_ARATH; NAC domain-containing protein 13
TrEMBLA0A078GKR40.0A0A078GKR4_BRANA; BnaA07g10300D protein
TrEMBLM4D7820.0M4D782_BRARP; Uncharacterized protein
STRINGBra012342.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM153171517
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32870.11e-171NAC domain protein 13
Publications ? help Back to Top
  1. Vermeirssen V,De Clercq I,Van Parys T,Van Breusegem F,Van de Peer Y
    Arabidopsis ensemble reverse-engineered gene regulatory network discloses interconnected transcription factors in oxidative stress.
    Plant Cell, 2014. 26(12): p. 4656-79
    [PMID:25549671]
  2. O'Shea C, et al.
    Structures and Short Linear Motif of Disordered Transcription Factor Regions Provide Clues to the Interactome of the Cellular Hub Protein Radical-induced Cell Death1.
    J. Biol. Chem., 2017. 292(2): p. 512-527
    [PMID:27881680]