PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009103276.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 219aa    MW: 24603.6 Da    PI: 7.4449
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009103276.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.84.8e-174090155
             AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++ykGVr ++ +g+Wv+eIr       +++r++lg++ tae Aa+a++ a ++++g
  XP_009103276.1 40 KKYKGVRMRS-WGSWVSEIRAqN----QKTRIWLGSYSTAEAAARAYDVALLCIKG 90
                    59*****998.**********22....46***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576130No hitNo description
SMARTSM003805.5E-3441104IPR001471AP2/ERF domain
PROSITE profilePS5103221.0224198IPR001471AP2/ERF domain
PfamPF008473.7E-114190IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-1941100IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.3E-3041100IPR001471AP2/ERF domain
PRINTSPR003675.0E-94253IPR001471AP2/ERF domain
CDDcd000188.41E-2744100No hitNo description
PRINTSPR003675.0E-96480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MVKQEPKIQT SSKKDMSLTS PSHSSSSSSC KSKSKKNKIK KYKGVRMRSW GSWVSEIRAQ  60
NQKTRIWLGS YSTAEAAARA YDVALLCIKG PQANLNFPTS YSSSRFLLDE STILSPKSIK  120
RIAAQAANNS FDFFSPCISS AVSSPPDHDQ HHDDDVMQSL IGPFVDCRVS LMDTSSSWYE  180
MLFFGDGAPF DYYPELNSTM NMVDEYFYED ADIPLWSFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-15411021476Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed cotyledons, ovules and seeds of immature siliques. {ECO:0000269|PubMed:21069430}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Involved in salt and osmotic stress response pathways. May be regulated by the stress-related genes RD29A, RD22, DREB1A or P5CS during stress response (PubMed:27137403). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:27137403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009103276.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) and ethylene. Down-regulated by freezing and heat stresses. {ECO:0000269|PubMed:21069430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009103276.11e-162PREDICTED: ethylene-responsive transcription factor ERF012-like
SwissprotQ9SFE44e-87ERF12_ARATH; Ethylene-responsive transcription factor ERF012
TrEMBLM4D7381e-161M4D738_BRARP; Uncharacterized protein
STRINGBra012298.1-P1e-162(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29992767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.11e-85ERF family protein
Publications ? help Back to Top
  1. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  2. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]