PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009103294.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 549aa    MW: 61115.2 Da    PI: 4.7777
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009103294.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS430.71.1e-1311795493374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     + L++cA a+s+g+ e+a +lL++l++++s +gdp qR+aay++e+Laar+a s++ ly+al+++e +   s+e+laa+++++ev+P++kf++l+
  XP_009103294.1 179 KMLISCALALSEGKSEEALSLLNELRQIVSIQGDPSQRIAAYMVEGLAARMAASGKFLYRALRCKEPP---SDERLAAMQVLFEVCPCFKFGYLA 270
                     78*****************************************************************9...9*********************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     aN aI+e++  e++vHiiDfd++qG Q+++L++++a+ p++ p +R+Tgv++pes+  s   l+ +g rL+++A+  gv+f+f+++++k+   ++
  XP_009103294.1 271 ANGAIVESIRDEKEVHIIDFDVNQGNQYMTLIKTIAELPGKGPLMRLTGVDDPESVqrSVGGLRIIGLRLEQLAKDHGVSFKFEAVASKTSLIVS 365
                     ******************************************************9989999************************988899999* PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                     +++L +kpgEal+Vn+++qlh+++desv++ ++rde+L++vk+l+Pk+v+vveq++++n+ +F+ rf+ea eyysa+fdsl+++lpres+er++v
  XP_009103294.1 366 PSALGCKPGEALIVNFAFQLHHMPDESVTVVNQRDELLHMVKGLNPKLVTVVEQDVNTNTCPFFPRFMEAYEYYSAVFDSLDVTLPRESQERMNV 460
                     *********************************************************************************************** PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     Er++l+r+ivnvvaceg+er+er e ++kWr+r+++aGF++ p++++++ ++++l+++ +   y+v+ee g+l+++W+d++L+++SaWr
  XP_009103294.1 461 ERQCLARDIVNVVACEGEERIERYEVAGKWRARMMMAGFSSRPMGSRVTRSIESLIKEEYCSKYKVKEEMGELLFCWEDKSLIVASAWR 549
                     ************************************************************666*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.11151529IPR005202Transcription factor GRAS
PfamPF035143.8E-129179549IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MVEQTARVMS LVSSAEPSAA AYKNPKLYSL NENGYNSGGG TSVEIFDPDK SKNTCLTHDS  60
YPSQSYFLES PTEQHLVASG AASVSSFGSL DSFPYQSRLV PGSSMEFDDE QMRSKIQELE  120
RALLSDEDDN IMEGLDHLME IDNEWSYQNH SNKDSSSADS NSHSTSSKEV VSQATTPKKM  180
LISCALALSE GKSEEALSLL NELRQIVSIQ GDPSQRIAAY MVEGLAARMA ASGKFLYRAL  240
RCKEPPSDER LAAMQVLFEV CPCFKFGYLA ANGAIVESIR DEKEVHIIDF DVNQGNQYMT  300
LIKTIAELPG KGPLMRLTGV DDPESVQRSV GGLRIIGLRL EQLAKDHGVS FKFEAVASKT  360
SLIVSPSALG CKPGEALIVN FAFQLHHMPD ESVTVVNQRD ELLHMVKGLN PKLVTVVEQD  420
VNTNTCPFFP RFMEAYEYYS AVFDSLDVTL PRESQERMNV ERQCLARDIV NVVACEGEER  480
IERYEVAGKW RARMMMAGFS SRPMGSRVTR SIESLIKEEY CSKYKVKEEM GELLFCWEDK  540
SLIVASAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-5318454826378Protein SCARECROW
5b3h_A3e-5318454825377Protein SCARECROW
5b3h_D3e-5318454825377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.117080.0flower
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009103294.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009103294.10.0PREDICTED: scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLM4D7200.0M4D720_BRARP; Uncharacterized protein
STRINGBra012280.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69532744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]