PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009103298.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 261aa    MW: 29157 Da    PI: 4.7548
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009103298.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof118.13.4e-373391361
          zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                    e+a +cprC s+ntkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rk+ +s
  XP_009103298.1 33 ETAPPCPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNIPVGGGCRKRSRS 91
                    56678**************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-243385IPR003851Zinc finger, Dof-type
PfamPF027011.1E-313690IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.5283690IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103874IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MFPYTAHNVC QRQFPSPEIE IPAKWKISYG HEETAPPCPR CASSNTKFCY YNNYSLSQPR  60
YFCKGCRRYW TKGGSLRNIP VGGGCRKRSR SRRQSIHKRF GPNENLPDGL ISGSQSSPAG  120
SDIDLAAVFA QYVNAPSPSS TDNTTGSDQD SPVTTTTTTT NTHALNSLSW DICQETDVNL  180
GFYGEFNDLT NKIQEDERGV GHFLQEDQEE IFEFQGLLDD KDIQEILECS FSEEPDQLIS  240
QGSFMINGGH WSSTDLTTFG V
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18691KRSRSR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009103298.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009103298.20.0PREDICTED: dof zinc finger protein DOF1.2-like
SwissprotP683491e-150DOF12_ARATH; Dof zinc finger protein DOF1.2
TrEMBLM4D7170.0M4D717_BRARP; Uncharacterized protein
STRINGBra012277.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64622643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21340.11e-141Dof family protein