PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009103300.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 214aa    MW: 24796 Da    PI: 5.0644
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009103300.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM31.26.2e-109519633128
             NAM  33 vikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfy........kgrapkge 117
                     +  + diy+v+P++L  +   +++ + +  F++r ++           +sg+W+   +d++++s ++e++g k+++ fy        +  + + +
  XP_009103300.1  95 CYVTNDIYRVHPSTLVdHeDKRSTASGLCVFANRTEACG--YT--DGCESGRWRIVEEDNAIFSMSHEVMGYKRVFKFYeedkgryfDIVDGEQV 185
                     45667**********732233334457799999988764..33..33579*****************************5553332212233345 PP

             NAM 118 ktdWvmheyrl 128
                       +W+m+eyrl
  XP_009103300.1 186 LRTWIMEEYRL 196
                     678******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-7374IPR003441NAC domain
PROSITE profilePS5100516.563212IPR003441NAC domain
SuperFamilySSF1019419.81E-2179210IPR003441NAC domain
PfamPF023652.2E-4126196IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MEDRDVFTKN PSEVFEAENP FVVFVYPRTE ACGRTDGCGC GGWRIIGHDK LIKDEDTGKI  60
LGFKKILKFR LANQQDDGAY YLQVIFDSGG NEWPCYVTND IYRVHPSTLV DHEDKRSTAS  120
GLCVFANRTE ACGYTDGCES GRWRIVEEDN AIFSMSHEVM GYKRVFKFYE EDKGRYFDIV  180
DGEQVLRTWI MEEYRLVEEA MKDKVLCVIK RGRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009103300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105381.11e-126PREDICTED: uncharacterized protein LOC103831246
TrEMBLM4ERU11e-125M4ERU1_BRARP; Uncharacterized protein
STRINGBra031518.1-P1e-126(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37041459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60380.13e-47NAC family protein