PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009103468.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 275aa    MW: 30949.2 Da    PI: 10.1486
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009103468.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.00116988221
                    EETTTTEEESSHHHHHHHHH CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHir 21
                    +C+ Cgk+F ++  L  H+r
  XP_009103468.1 69 PCTECGKTFWSWKALFGHMR 88
                    5******************8 PP
2zf-C2H213.20.00026212234123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C +++s+   L+ H+r H
  XP_009103468.1 212 HKCNICYRVYSNGQALRGHMRYH 234
                     79*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.8066895IPR007087Zinc finger, C2H2
SMARTSM003550.0116890IPR015880Zinc finger, C2H2-like
PfamPF139124.4E-86892IPR007087Zinc finger, C2H2
SuperFamilySSF576672.8E-86990No hitNo description
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.5E-47090IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.8E-8147174No hitNo description
PfamPF139125.6E-8151175IPR007087Zinc finger, C2H2
PROSITE profilePS501579.827152179IPR007087Zinc finger, C2H2
SMARTSM003551.3152174IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280154174IPR007087Zinc finger, C2H2
SuperFamilySSF576672.28E-5210239No hitNo description
PfamPF139126.8E-7211235IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.637212239IPR007087Zinc finger, C2H2
SMARTSM003550.036212234IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280214234IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MIHNHLPPVS NAIIPIFPKP NLHLALSPSY HQSPRKKRTR TVASTSSPSP KKTKYTKKPD  60
PNAPKITRPC TECGKTFWSW KALFGHMRCH PERQWRGINP LPNHRVPIRT SSSKHLNQRF  120
SLMSEEDYEV ASYLLMLSEA KPLSPSSSGE RFECRGCKKV FGSHQALGGH RASHKNVKGC  180
FAITNVTGDD PATVTSNQDH QQGKTVTFSE HHKCNICYRV YSNGQALRGH MRYHCWERER  240
ETVLVGALDL NVPVTRQDLS SSDTSGCSLD LRLGL
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the germ cells following microspore division, increases during development and persists into mature pollen. {ECO:0000269|PubMed:24876252}.
UniprotTISSUE SPECIFICITY: Expressed exclusively in pollen. {ECO:0000269|PubMed:24876252}.
Functional Description ? help Back to Top
Source Description
UniProtMediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009103468.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896560.0AC189656.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS015K01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009103468.10.0PREDICTED: zinc finger protein ZAT3
SwissprotO654991e-125ZAT3_ARATH; Zinc finger protein ZAT3
TrEMBLM4D5440.0M4D544_BRARP; Uncharacterized protein
STRINGBra011601.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46191836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.11e-122C2H2-like zinc finger protein