PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009103487.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 597aa    MW: 64824.6 Da    PI: 4.491
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009103487.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS362.27.6e-1112325978374
            GRAS   8 cAeavss.gdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                     c   ++s ++   a+a+L r+++ +s++gdp++R+  yfteAL +rl+   +++++    s+++   +++ + ++k++++++P++kf+hltaNqa
  XP_009103487.1 232 CSLILDSsDSVDPAKAALVRIKKSVSEHGDPTERVGYYFTEALCNRLSP--DSVSN---DSSQAAAIVENLILSYKTLNDACPYFKFAHLTANQA 321
                     5555555145569***********************************9..44443...3333333499999*********************** PP

            GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                     Ilea+e+++++Hi+Df+i qG+QWpaLlqaLa+R++g+p ++Ri g+ +p+      + +l +tg+rL++fA+ l+++f+f + v + ++ l+ +
  XP_009103487.1 322 ILEATEHSSKIHIVDFGIVQGIQWPALLQALATRSSGKPaQVRISGIPAPSCLgqsPEPSLIATGNRLRDFAKVLDLNFDFIP-VLTPVQLLNGS 415
                     ***********************************77666*********9987888999************************.799******** PP

            GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287
                     ++rv+p+EalaVn++lql++llde+ ++ +   + L+l +sl+P vv++ e ++++n+  F++r+ +al++ysa+f+sle +l+r+seer  vEr
  XP_009103487.1 416 SFRVDPDEALAVNFMLQLYKLLDETPAVFD---TALRLARSLNPMVVTLGEYDVSLNRVGFANRVKNALHFYSAVFESLEPSLGRDSEERLRVER 507
                     **********************99988887...************************************************************** PP

            GRAS 288 ellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                     +++gr i+ ++  e +  +r r+e +e+Wr  +e+aGF++v+ls++a++qa+ ll +++ s  y++ e++  +v l W+d pL++vS+Wr
  XP_009103487.1 508 VMFGRTISGLIGPEITGnQRLRMEGKEQWRVLMENAGFESVKLSNYAVSQAEILLWNYNySSLYSIVESKPGFVsLAWNDLPLLAVSSWR 597
                     ************997764789**************************************9999*******99999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.236199575IPR005202Transcription factor GRAS
PfamPF035142.6E-108232597IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MAYMCTDSGN LMAIAQQVIK QKQQQEQQPQ DHQIFGINPL SLNPWPTANT QSLGFGLSGS  60
GFPDPFQVNG GGDPGDSGFP FHSLEHHHPT AGGGVGGGGF RLSDFDGGTG GEFESDEWME  120
TLITGGDSVA AAEGPDCDTW QNNNDFVIYG PDPFAAYPSS QPSDLNQVVA TSTSLPSTLW  180
PPSSPLSAPP LPSLSPPRQK IKDPETNDSE DGGSGSHDFD LESPLLRAIH DCSLILDSSD  240
SVDPAKAALV RIKKSVSEHG DPTERVGYYF TEALCNRLSP DSVSNDSSQA AAIVENLILS  300
YKTLNDACPY FKFAHLTANQ AILEATEHSS KIHIVDFGIV QGIQWPALLQ ALATRSSGKP  360
AQVRISGIPA PSCLGQSPEP SLIATGNRLR DFAKVLDLNF DFIPVLTPVQ LLNGSSFRVD  420
PDEALAVNFM LQLYKLLDET PAVFDTALRL ARSLNPMVVT LGEYDVSLNR VGFANRVKNA  480
LHFYSAVFES LEPSLGRDSE ERLRVERVMF GRTISGLIGP EITGNQRLRM EGKEQWRVLM  540
ENAGFESVKL SNYAVSQAEI LLWNYNYSSL YSIVESKPGF VSLAWNDLPL LAVSSWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1382235972375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.32810.0leaf| silique
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves, sepals, filaments of stamen, and in the central cylinder of the elongation zone in root. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009103487.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009103487.10.0PREDICTED: scarecrow-like protein 4
SwissprotQ9FL030.0SCL4_ARATH; Scarecrow-like protein 4
TrEMBLA0A3P6BGS60.0A0A3P6BGS6_BRACM; Uncharacterized protein
STRINGBo7g064520.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47862752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein
Publications ? help Back to Top
  1. Wortman JR, et al.
    Annotation of the Arabidopsis genome.
    Plant Physiol., 2003. 132(2): p. 461-8
    [PMID:12805579]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]