PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009103566.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 262aa    MW: 29922.6 Da    PI: 6.8309
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009103566.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00029118139223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                     +C  Cgk F ++++L  H+r+H
  XP_009103566.1 118 RCCLCGKEFQTRHSLFGHMRRH 139
                     6********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.8895077IPR007087Zinc finger, C2H2
SMARTSM003551.15072IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.8E-55072No hitNo description
PROSITE patternPS0002805272IPR007087Zinc finger, C2H2
PfamPF139120.00355274IPR007087Zinc finger, C2H2
SuperFamilySSF576673.8E-5112139No hitNo description
SMARTSM003550.3117139IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.847117139IPR007087Zinc finger, C2H2
PfamPF139120.0026118141IPR007087Zinc finger, C2H2
PROSITE patternPS000280119139IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MKRTRDDDNP SHFLHQSSSV YDHNDNDDDE EDCSSGGFQP PSPPPQQVKH FCVICSKQFS  60
SGKAYGGHVR IHSSEYSNKG KTKKMRMKKK RKIGLVNKEK EKEKEIDLIR ADVEDEKRCC  120
LCGKEFQTRH SLFGHMRRHP ERSWKGVRPP PPEKLNLSFL DDDDDDENDD DDEAMSRSMM  180
MSGVTRDVHV AACCLMMLKS GKRKANSEVR SFSYCNDEMD VKGSTVDMKI KVEIEVNASN  240
PQAEAKKRSL ELDLNQPCND SC
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009103566.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009103566.10.0PREDICTED: zinc finger protein 445
RefseqXP_013650779.10.0zinc finger protein 445
TrEMBLM4D6D00.0M4D6D0_BRARP; Uncharacterized protein
STRINGBra012039.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114552029
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26940.12e-69C2H2 family protein