PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009103599.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YB
Protein Properties Length: 221aa    MW: 24485 Da    PI: 4.0048
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009103599.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB41.72.7e-1310102794
           NF-YB   7 flPianvsrimkkvlPa.....nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                     +lP+a v r++k  l +     +  i k+a     e +  fi ++++ a+d c+  +r+t++++d++ al ++ f +++eplk+ l  +++ +
  XP_009103599.1  10 ELPLAIVRRVVKDKLSEcspdyDVSIHKEALLAFSESARIFIHYLSATANDICKDSRRQTMKAEDVFKALEDMEFSEFLEPLKASLDDFKKKN 102
                     79**********999652222356899***********************************************************9998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.7E-241099IPR009072Histone-fold
PfamPF008081.4E-81079IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471134.56E-2011127IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MDSEKAVVDE LPLAIVRRVV KDKLSECSPD YDVSIHKEAL LAFSESARIF IHYLSATAND  60
ICKDSRRQTM KAEDVFKALE DMEFSEFLEP LKASLDDFKK KNAGKKAASG SGAAAASKPK  120
ETKKRKHEEA STQKGVGKSK RDEGDLKNDE DDNTKENEDD NTEENGNDEE EEEEDANGNE  180
ENSMEEIENE DNSMEEAGSG SGEDDENEGS GEEEEGDDED E
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.125550.0flower| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009103599.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7876730.0KC787673.1 Brassica napus transcription factor subunit NF-YB11A (NF-YB11A) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009103599.11e-154PREDICTED: DNA polymerase epsilon subunit 3
TrEMBLA0A397YKX31e-153A0A397YKX3_BRACM; Uncharacterized protein
TrEMBLM4D6A71e-153M4D6A7_BRARP; Uncharacterized protein
STRINGBra012016.1-P1e-154(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM120072430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.11e-64nuclear factor Y, subunit B11