PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009103654.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 288aa    MW: 31207.9 Da    PI: 8.0689
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009103654.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00065117139123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+++F++   L  H  +H
  XP_009103654.1 117 YECKTCNRTFPSFQALGGHRASH 139
                     99**********99999998887 PP
2zf-C2H213.30.00024193215123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  F++   L  H+r+H
  XP_009103654.1 193 HECSICGSEFTSGQALGGHMRRH 215
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.39E-8116139No hitNo description
PfamPF139122.5E-13116141IPR007087Zinc finger, C2H2
SMARTSM003550.052117139IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.554117144IPR007087Zinc finger, C2H2
PROSITE patternPS000280119139IPR007087Zinc finger, C2H2
SuperFamilySSF576671.39E-8188215No hitNo description
Gene3DG3DSA:3.30.160.600.001191215IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.5E-11192216IPR007087Zinc finger, C2H2
SMARTSM003550.019193215IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.743193215IPR007087Zinc finger, C2H2
PROSITE patternPS000280195215IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MMGQDHEVGS DQTQIIKGKR TKRQRSSSST FLVAAAAPTI TSTSSSAGGE RTASEEYNSV  60
VSSPVTTTDC TEEEEDMAIC LIMLARGAAP SPPLPDLKNS TKTDKNLYQK NSSFYVYECK  120
TCNRTFPSFQ ALGGHRASHK KPRASIDEKA KVPLTQLKSS ASEEGQKGHF KVSGPALASK  180
ASNIIISKAN KVHECSICGS EFTSGQALGG HMRRHRTVTN VVSSPVTAAE VSRNSTDEET  240
ENLSRSMEQR KYLPLDLNLP APEDDLRESK FQGIVFSATT PALIDCHY
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:9132053}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009103654.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009103654.10.0PREDICTED: zinc finger protein ZAT5
RefseqXP_013651797.10.0zinc finger protein ZAT5-like
SwissprotQ681X41e-145ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLM4D6620.0M4D662_BRARP; Uncharacterized protein
STRINGBra011970.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58622748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-135C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]