PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009103694.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

LBD

Protein Properties

Length: 233aa MW: 25579.9 Da PI: 4.6099

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009103694.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	137.4	5.2e-43	59	158	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r+da++s+vyeA ar+rdPvyG++g i +lq+q++ql+a+la XP_009103694.1 59 PCAACKILRRRCAEKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARLRDPVYGCAGAIYHLQRQVSQLQAQLA 153 7********************************************************************************************** PP DUF260 96 llkee 100 +++ e XP_009103694.1 154 KTQVE 158 99865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.379	58	159	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-42	59	156	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MLKMEINGST STATPTASAV AVVSASETTT PVSSPSLTSS PPPSLSPPQP PQPQVVLSPC 60 AACKILRRRC AEKCVLAPYF PPTDPAKFTI AHRVFGASNI IKFLQELPES QRTDAVNSMV 120 YEAGARLRDP VYGCAGAIYH LQRQVSQLQA QLAKTQVELV SMQLQRSDLL ELFYKMEQTK 180 LSAQEGQQNM SFESSFDSGD EFISSPDEVT NDLVFLEDTN NNNSSMSWWD PLW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-41	58	160	10	112	LOB family transfactor Ramosa2.1
5ly0_B	7e-41	58	160	10	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009103694.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473840	0.0	AB473840.1 Arabidopsis thaliana ASL7 mRNA for ASYMMETRIC LEAVES2-like 7 protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009103694.1	1e-173	PREDICTED: LOB domain-containing protein 11-like
Refseq	XP_013651783.1	1e-173	LOB domain-containing protein 11-like
Swissprot	Q9SK08	1e-127	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	A0A397YSL0	1e-171	A0A397YSL0_BRACM; Uncharacterized protein
TrEMBL	M4D634	1e-171	M4D634_BRARP; Uncharacterized protein
STRING	Bra011942.1-P	1e-172	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1141	28	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	1e-101	LOB domain-containing protein 11