PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009103700.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 238aa    MW: 27086.6 Da    PI: 8.4696
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009103700.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.59.6e-201662349
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     e + n qvtfskRr+g++KKA+EL++LC +   vi+fs+ +k++ +
  XP_009103700.1 16 MEKDANLQVTFSKRRQGLFKKASELCTLCRVGMGVIVFSPGQKVFSF 62
                    5788999************************************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.2E-25665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.642666IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-24787IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-15828IPR002100Transcription factor, MADS-box
PfamPF003191.6E-211562IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-152843IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-154364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MPENKRGRQK VPIAKMEKDA NLQVTFSKRR QGLFKKASEL CTLCRVGMGV IVFSPGQKVF  60
SFGNPDVKSV LDNFKNHNHN PLLYTQDGLN PTIQNLNSLL TQEMAILEME KKRKKELDEI  120
KNKREETEKW WEKPPNQLDL RQNTCLTSAL ENLKMELVSQ RSQHLQAIDP PNHYGESYNN  180
IVGGGNVDLF DQTRMFDGNA SNYNPNSIIS NHGPMFGNND NTNVFEALGP RSNLNLPE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110114KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009103700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009103700.11e-178PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A3P6BBS21e-176A0A3P6BBS2_BRACM; Uncharacterized protein
TrEMBLM4D6301e-176M4D630_BRARP; Uncharacterized protein
STRINGBra011938.1-P1e-177(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16574611
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-62AGAMOUS-like 62