PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009103933.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 313aa    MW: 34713.6 Da    PI: 6.7823
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009103933.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.82.5e-17226259134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  XP_009103933.1 226 CMHCEITKTPQWRLGPMGPKTLCNACGVRYKSGR 259
                     99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169925.3E-861313IPR016679Transcription factor, GATA, plant
SMARTSM004011.7E-15220270IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.635220256IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.3E-14224257IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577169.03E-15224283No hitNo description
CDDcd002021.06E-13225272No hitNo description
PROSITE patternPS003440226251IPR000679Zinc finger, GATA-type
PfamPF003203.2E-15226259IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MIGQSFFPED LDCGNFFDNM DDILDFPGGD IDVGFDIGES DSFPNIWTTH HDTWHAASDP  60
LFASNTNTNS DSSPELYVPF EDIVKVERPP SLVEKKEDSF STNMDSSSSH STFRSSSPVS  120
VLESSSSSSQ TTNTTSLVLP GKQGRPRTKR PRPHVQEKDG VKDIVDSCLI VRIPKQFVSD  180
HSKMISKKKK KAKVTSSSSS SGIDFEVNGN NNVDSYSSEQ NPVRKCMHCE ITKTPQWRLG  240
PMGPKTLCNA CGVRYKSGRL FPEYRPAASP TFTPALHSNS HKKVAEMRSK RCKDGSYTTQ  300
ENDMQDLIPN TLV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148152KRPRP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009103933.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896170.0AC189617.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH102A07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009103933.10.0PREDICTED: GATA transcription factor 8-like
SwissprotQ9SV301e-151GATA8_ARATH; GATA transcription factor 8
TrEMBLM4CG610.0M4CG61_BRARP; GATA transcription factor
STRINGBra003194.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49752751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.21e-134GATA family protein
Publications ? help Back to Top
  1. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]