PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009103997.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 164aa    MW: 18475.9 Da    PI: 4.7889
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009103997.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM552.8e-17251521128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev..diykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgkdk 90 
                     lppG+ Fh +d +l++ +L + v++++l++   i+++  d+y++ P  L  +  + +e++w+fF++++      +r+ r++    g W + g +k
  XP_009103997.1  25 LPPGYGFHASDAQLLQLFLGPFVDERELKT-CPIHNItgDVYSSSPDVLTgAYEHDGEDKWFFFCTNKYDDDVTSRAGRVIVggGGEWVKMGPSK 118
                     79*************************998.558887789*********9434444667*********999999*****65434789******** PP

             NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++++ +++l g k+t  fy  +      + W m+e +l
  XP_009103997.1 119 KLFA-NNTLLGFKRTQDFYV-QG--MDLSYWRMEELSL 152
                     ****.999***********3.22..3468999999765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-2119155IPR003441NAC domain
PROSITE profilePS5100522.35125164IPR003441NAC domain
PfamPF023653.4E-1026151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MEQAPPPANV VESITSFQLH RNLNLPPGYG FHASDAQLLQ LFLGPFVDER ELKTCPIHNI  60
TGDVYSSSPD VLTGAYEHDG EDKWFFFCTN KYDDDVTSRA GRVIVGGGGE WVKMGPSKKL  120
FANNTLLGFK RTQDFYVQGM DLSYWRMEEL SLRAKVCIDF VSLD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009103997.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013650916.11e-106NAC domain-containing protein 59-like
TrEMBLM4CGA41e-112M4CGA4_BRARP; Uncharacterized protein
STRINGBra003237.1-P1e-113(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2032244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56530.14e-13NAC domain containing protein 64