PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009104011.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 280aa    MW: 31834.5 Da    PI: 6.7337
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009104011.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM26.51.8e-08210262253
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvka 53 
                     p+G+rF P+d+ + ++yL++kv ++++++  +  e+ +i+++ P+dLp++++a
  XP_009104011.1 210 PAGCRFLPSDDMMANYYLRNKVLEQPINACIIPGECpHIFSIPPRDLPENLTA 262
                     89**************************9777777799*********964333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011917.6E-837103IPR005491ENT domain
PROSITE profilePS5113810.66537124IPR005491ENT domain
SuperFamilySSF1586395.49E-73896IPR005491ENT domain
PfamPF037357.0E-123894IPR005491ENT domain
SMARTSM011911.8130190IPR005491ENT domain
PfamPF037351.3E-7133193IPR005491ENT domain
SuperFamilySSF1019412.75E-7208260IPR003441NAC domain
PROSITE profilePS5100510.486209280IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MADNKDLDSN PPAEDLTICP LKKIEIAHES ESEPELKKQK LKELQRKAYY SVLHTSKAEN  60
SATSHKKSHI IQRLMNEWKI DQETHVSVAK KVDNSQERNA TSSLNFVPES LVVKRISARL  120
PNEECLPSNK NMKLEELHKQ AYEDVLSAFN AESPTLSSSR VLIVQDLLEE CNNIDHKAHI  180
SAKIYDKVET DPLLVEPFIK FFNTLKKFHP AGCRFLPSDD MMANYYLRNK VLEQPINACI  240
IPGECPHIFS IPPRDLPENL TAKTLGVSGH EWVKILLCLV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009104011.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009104011.10.0PREDICTED: uncharacterized protein LOC103830058 isoform X2
TrEMBLM4CGB11e-171M4CGB1_BRARP; Uncharacterized protein
STRINGBra003244.1-P1e-172(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41090.19e-09NAC domain containing protein 95