PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009104061.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 243aa MW: 27122.9 Da PI: 8.1072

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009104061.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20	1.9e-06	215	237	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+C+k F+ + +L +Hi + H XP_009104061.1 215 VCPKCSKGFREPGELLKHIDKdH 237 7******************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF118310	4.45E-12	4	57	No hit	No description
Gene3D	G3DSA:4.10.1110.10	3.7E-10	10	49	IPR000058	Zinc finger, AN1-type
PROSITE profile	PS51039	7.768	10	59	IPR000058	Zinc finger, AN1-type
Pfam	PF01428	2.4E-13	13	49	IPR000058	Zinc finger, AN1-type
SMART	SM00154	1.4E-4	13	52	IPR000058	Zinc finger, AN1-type
Gene3D	G3DSA:4.10.1110.10	4.4E-10	91	147	IPR000058	Zinc finger, AN1-type
SuperFamily	SSF118310	6.28E-9	93	145	No hit	No description
PROSITE profile	PS51039	7.947	98	151	IPR000058	Zinc finger, AN1-type
Pfam	PF01428	8.4E-8	101	141	IPR000058	Zinc finger, AN1-type
SMART	SM00154	0.017	101	142	IPR000058	Zinc finger, AN1-type
PROSITE profile	PS50157	9.099	214	242	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	216	237	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MGTPEFPDLG KHCSVDYCKQ IDFLPFTCDR CIQVFCLDHR SYMKHSCPKG NRGDVTVVIC 60 PLCAKGVRLN PDEDPNITWE KHVNTDCDPS NYEKTVKKKK CPVPRCRELL TFSNTIKCRD 120 CTIEHCLKHR FGPDHSCSGP KKLESSFSFM GFLSTTNTKE APASSSSRWS SLLASAEASI 180 RELGNDISQK LQFSSGGDGN LEKTQERNGK VTVDVCPKCS KGFREPGELL KHIDKDHRGT 240 SIA

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in environmental stress response. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009104061.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK119096	0.0	AK119096.1 Arabidopsis thaliana At3g57480 mRNA for unknown protein, complete cds, clone: RAFL21-44-N05.
GenBank	BT006223	0.0	BT006223.1 Arabidopsis thaliana At3g57480 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009104061.1	0.0	PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 13
Refseq	XP_013652024.1	0.0	zinc finger AN1 and C2H2 domain-containing stress-associated protein 13
Refseq	XP_013746697.1	0.0	zinc finger AN1 and C2H2 domain-containing stress-associated protein 13
Swissprot	Q9SCM4	1e-155	SAP13_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 13
TrEMBL	A0A078JP66	1e-180	A0A078JP66_BRANA; BnaAnng30120D protein
TrEMBL	M4CGF1	1e-180	M4CGF1_BRARP; Uncharacterized protein
STRING	Bra003284.1-P	1e-180	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3908	27	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57480.1	1e-148	C2H2 family protein

Publications ? help Back to Top
Dixit A, et al. A stress-associated protein, AtSAP13, from Arabidopsis thaliana provides tolerance to multiple abiotic stresses. Plant Cell Environ., 2018. 41(5): p. 1171-1185 [PMID:29194659]