PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009104264.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 243aa    MW: 27131.9 Da    PI: 5.1945
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009104264.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.3e-1966115255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g
  XP_009104264.1  66 TYRGVRKRS-WGKWVSEIREPKK---KSRIWLGTYPTAEMAARAHDVAALAIKG 115
                     69****888.**********854...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.7E-3566129IPR001471AP2/ERF domain
PROSITE profilePS5103223.60466123IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-2166123IPR016177DNA-binding domain
PfamPF008475.3E-1366115IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.9E-3266124IPR001471AP2/ERF domain
PRINTSPR003671.2E-106778IPR001471AP2/ERF domain
CDDcd000181.88E-3267125No hitNo description
PRINTSPR003671.2E-1089105IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MEKQINVESS ATHHQEDNNA STITTSTVAA VTSSESWSSK RYLVQDTEAG RKRRKSNGGN  60
GNKNPTYRGV RKRSWGKWVS EIREPKKKSR IWLGTYPTAE MAARAHDVAA LAIKGNSGCL  120
NFPELSTLLP RPVSCSPKDI QAAAAKAAEV MWQEPVIDEK LANERSYSEL STAQSSTSSS  180
FVFSSDTLDT LSTDKESNEE TMFDLPDLFT EGFMNHNDSF RYYESTTTWQ LYGEDVGFAW  240
LDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-1759123772Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009104264.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009104264.10.0PREDICTED: ethylene-responsive transcription factor ERF035-like
SwissprotQ9M2102e-94ERF35_ARATH; Ethylene-responsive transcription factor ERF035
TrEMBLA0A397YUA70.0A0A397YUA7_BRACM; Uncharacterized protein
TrEMBLM4CGT20.0M4CGT2_BRARP; Uncharacterized protein
STRINGBra003415.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60490.11e-77ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]