PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009104273.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 297aa    MW: 33834.6 Da    PI: 8.7296
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009104273.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00024527123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ykC  C+ksF +   L  H+r+H
  XP_009104273.1  5 YKCRFCSKSFFNGRALGGHMRSH 27
                    9********************99 PP
2zf-C2H215.45.4e-05189211123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ Cgk+F++   L  H  +H
  XP_009104273.1 189 FTCETCGKVFKSYQALGGHRASH 211
                     89***********9999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.9E-4227IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.91E-10427No hitNo description
PfamPF139127.5E-6429IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.492527IPR007087Zinc finger, C2H2
SMARTSM003550.0065527IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
SuperFamilySSF576678.91E-10184211No hitNo description
PfamPF139124.7E-11189213IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.053189216IPR007087Zinc finger, C2H2
SMARTSM003550.02189211IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280191211IPR007087Zinc finger, C2H2
PROSITE profilePS501579.058234256IPR007087Zinc finger, C2H2
PfamPF139125.0E-12234256IPR007087Zinc finger, C2H2
SMARTSM003550.23234256IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280236256IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MESYYKCRFC SKSFFNGRAL GGHMRSHMPS LHKFSIQDEE GERASQLNDE TESDVSSSSS  60
EKEEDKRNGL RDNKHPMMED NESETESSRN ITNPTRKRSK RTRKMETFAA KKRKTSQLGY  120
KTEPECEPPQ SSASDTTTEE DLAFCLMLLS RDKWKKKKKN KASSNKEVVE EIETEASEGH  180
NTSSKKGRFT CETCGKVFKS YQALGGHRAS HKKNRVSNKT EQRSETEYPE KRIHECPICL  240
RVFASGQALG GHKRSHGIGN LSVDHHHQVR VDSVKQRTID LNLPAPTDEE EVSVVFQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195113RKRSKRTRKMETFAAKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009104273.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009104273.10.0PREDICTED: zinc finger protein ZAT9-like
SwissprotQ9M2021e-124ZAT9_ARATH; Zinc finger protein ZAT9
TrEMBLM4CGT90.0M4CGT9_BRARP; Uncharacterized protein
STRINGBra003422.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-111C2H2-like zinc finger protein