PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009104292.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 785aa    MW: 85993.2 Da    PI: 6.6896
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009104292.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox611.8e-19101156156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++ Le++F+++ +p++++r +L+++l+L+ rqVk+WFqNrR+++k
  XP_009104292.1 101 KKRYHRHTAKQIQDLESVFKECAHPDEKQRLDLSRRLNLDPRQVKFWFQNRRTQMK 156
                     688999***********************************************999 PP
2START185.72.4e-583015202206
                     HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                     la++a++elvk+a+  ep+Wv+ss     ++n++e+ ++f++  +     + +ea++++g+v+ ++  lve+l+d+  +W e+++    + +t+e
  XP_009104292.1 301 LALAAMEELVKMAQRHEPLWVRSSdtgfVMLNKEEYDTSFSRVVGlkqdgFVSEASKETGNVIINSLALVETLMDSE-RWAEMFPsmisRTSTTE 394
                     6899************************77777777777755444777889**************************.*******9999****** PP

                     EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
           START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171
                      issg      gal+lm aelq+lsplvp R + f+R+++q+ +g+w++vdvS+ds ++ + sss+ R   lpSg+l+++++ng+skvtw+eh++
  XP_009104292.1 395 IISSGmggtrnGALHLMHAELQLLSPLVPvRQVSFLRFCKQHAEGVWAVVDVSIDSIREGS-SSSCRR---LPSGCLVQDMANGYSKVTWIEHTE 485
                     ************************************************************9.777766...************************ PP

                     --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 172 lkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     ++++ +h l+r+l++ gla+ga++w+a+lqrqce+
  XP_009104292.1 486 YDENRIHRLYRPLLSCGLAFGAQRWMAALQRQCEC 520
                     *********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.09E-1988158IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-2095165IPR009057Homeodomain-like
PROSITE profilePS5007117.39498158IPR001356Homeobox domain
SMARTSM003897.9E-1899162IPR001356Homeobox domain
PfamPF000464.5E-17101156IPR001356Homeobox domain
CDDcd000866.60E-16105158No hitNo description
PROSITE patternPS000270133156IPR017970Homeobox, conserved site
PROSITE profilePS5084839.844291523IPR002913START domain
SuperFamilySSF559613.43E-30294520No hitNo description
CDDcd088758.64E-111295519No hitNo description
SMARTSM002341.0E-42300520IPR002913START domain
PfamPF018522.7E-50301520IPR002913START domain
SuperFamilySSF559613.16E-18549777No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 785 aa     Download sequence    Send to blast
MNFNGYLGDG SSRDRISDVP YSDNFSFSAA ATMPHSRPFS SNGLSLGLQT NGVNGEAFET  60
NVTRNKSRGG EDVESRSESD NAEAVSGDDL ETGDKPPRKK KKRYHRHTAK QIQDLESVFK  120
ECAHPDEKQR LDLSRRLNLD PRQVKFWFQN RRTQMKTQIE RHENALLRQE NDKLRAENMS  180
VREAMRNPMC SNCGGPAVLG EVSMEEQHLR IENSRLKDEL DRVCALTGKF LGRSPSGSHH  240
VPDSSLVLGV GVGSGGGFTL SSPSLPQASP RFEISNGTGL ATVNIQAPVS DFDQRSRYLD  300
LALAAMEELV KMAQRHEPLW VRSSDTGFVM LNKEEYDTSF SRVVGLKQDG FVSEASKETG  360
NVIINSLALV ETLMDSERWA EMFPSMISRT STTEIISSGM GGTRNGALHL MHAELQLLSP  420
LVPVRQVSFL RFCKQHAEGV WAVVDVSIDS IREGSSSSCR RLPSGCLVQD MANGYSKVTW  480
IEHTEYDENR IHRLYRPLLS CGLAFGAQRW MAALQRQCEC LTILMSSTVS PSRSPTPISC  540
NGRKSMLKLA KRMTDNFCGG VCASSLQKWS KLNVGNVDED VRIMTRKSVD DPGEPPGIVL  600
NAATSVWMPV SPKRLFDFLG NERLRSEWDI LSNGGPMQEM AHIAKGHDHS NSVSLLRATA  660
INANQSSMLI LQETSIDAAG AVVVYAPVDI PAMQAVMNGG DSAYVALLPS GFAILPSAPQ  720
LSEERNGNGS GGCMEEGGSL LTVAFQILVN SLPTAKLTVE SVETVNNLIS CTVQKIKAAL  780
HCDSN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197102RKKKKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.17230.0flower
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in trichomes forming at the base of young leaves, in endodermal cell lines around emergent lateral roots and in the epidermal layer of the stamen filament. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00418DAPTransfer from AT3G61150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009104292.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1824900.0DQ182490.1 Brassica napus baby boom interacting protein 2 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009104292.10.0PREDICTED: homeobox-leucine zipper protein HDG1
SwissprotQ9M2E80.0HDG1_ARATH; Homeobox-leucine zipper protein HDG1
TrEMBLM4CGV60.0M4CGV6_BRARP; Uncharacterized protein
STRINGBra003439.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]