PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009104332.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 283aa    MW: 31790.5 Da    PI: 5.1912
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009104332.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.4e-17102152256
             AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 
                     +y+GVr+++ +g+++AeIrd       r+r++lg+f taeeAa a+++a+ +l+g+
  XP_009104332.1 102 KYRGVRQRR-WGSFAAEIRD----SaSRTRIWLGTFATAEEAAVAYDRAAIRLKGH 152
                     8*****998.**********....3235*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.798102159IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-28102158IPR001471AP2/ERF domain
PfamPF008471.8E-11102152IPR001471AP2/ERF domain
SMARTSM003802.1E-34102165IPR001471AP2/ERF domain
CDDcd000181.29E-28102158No hitNo description
SuperFamilySSF541711.57E-19102159IPR016177DNA-binding domain
PRINTSPR003671.2E-9103114IPR001471AP2/ERF domain
PRINTSPR003671.2E-9125141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MERGSRRVKF TEHCTVKPVP AKPSNGSPRV VRISFTDPFA TDSSSDEEEN DKASPTPRVK  60
RYVEEIRFGE TKPPRKARCK AEKKGCGGER KAKADVSANP IKYRGVRQRR WGSFAAEIRD  120
SASRTRIWLG TFATAEEAAV AYDRAAIRLK GHNALTNFLT PPSPEETTPV IDLKTVSGCY  180
SGSQSLCSPT SVLRFNVKEE TAEVKPDVAG LFPDPYSLPE FSLAGECFWD SEFPPEPLFV  240
DEIEIRKPVP NRRDDDEPEE FSFRLNGDFD STPWDVDNFF ELD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-18103158359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-18103158662ATERF1
3gcc_A1e-18103158662ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009104332.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009104332.10.0PREDICTED: ethylene-responsive transcription factor CRF6-like
SwissprotQ9M3741e-95CRF6_ARATH; Ethylene-responsive transcription factor CRF6
TrEMBLM4CGX90.0M4CGX9_BRARP; Uncharacterized protein
STRINGBra003462.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25782571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61630.16e-87cytokinin response factor 6