PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009104428.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 750aa    MW: 83810.5 Da    PI: 6.7555
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009104428.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox665.2e-2197152156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     r+k +++t++q++ +e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  XP_009104428.1  97 RKKYHRHTTDQIRHMEALFKETPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 152
                     7999************************************************9877 PP
2START228.71.7e-712604881206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                     e+a++a+ el+k+a+++ep+W +s     e++n+de+l++f+++++      +++ea+r++g+v+m++++l ++++d+  qW+e++a    ka t
  XP_009104428.1 260 EIANRATLELQKMATSGEPLWLRSLetgrEILNYDEYLKEFPQDQTssfhgrKTIEASRDVGIVFMDAHKLAQSFMDVE-QWKEMFAclisKAVT 353
                     578999*************************************************************************.*************** PP

                     EEEECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--...-TTSEE-EESSEEEEEEEECTCEEEEEE CS
           START  82 levissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe..sssvvRaellpSgiliepksnghskvtw 166
                     ++vi++g       ga+qlm+ e+q+l+p+vp R+++fvR++rql+ ++w+ivdvSv+ e++++   + s+ R++++pSg++ie++snghskvtw
  XP_009104428.1 354 VDVIRQGegpsridGAIQLMFGEMQLLTPVVPtREVYFVRSCRQLSPEKWAIVDVSVSMEEDNNAekEGSLLRCRKRPSGCIIEDTSNGHSKVTW 448
                     ***********************************************************99999888899************************* PP

                     EE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 167 vehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     veh dl++++++ l+rs+v++gla+gak+wvatlq +ce+
  XP_009104428.1 449 VEHLDLSASTVQPLFRSFVNTGLAFGAKHWVATLQLHCER 488
                     **************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.8E-2382148IPR009057Homeodomain-like
SuperFamilySSF466895.85E-2088155IPR009057Homeodomain-like
PROSITE profilePS5007117.81594154IPR001356Homeobox domain
SMARTSM003899.6E-1896158IPR001356Homeobox domain
PfamPF000462.7E-1897152IPR001356Homeobox domain
CDDcd000864.89E-16101152No hitNo description
PROSITE patternPS000270129152IPR017970Homeobox, conserved site
PROSITE profilePS5084843.863251491IPR002913START domain
SuperFamilySSF559612.11E-32254488No hitNo description
CDDcd088751.11E-107255487No hitNo description
PfamPF018522.4E-64260488IPR002913START domain
SMARTSM002342.8E-80260488IPR002913START domain
Gene3DG3DSA:3.30.530.205.1E-8314488IPR023393START-like domain
SuperFamilySSF559611.92E-16517736No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MSMAVEMSSK QPTKDFFSSP ALSLSLAGIF RNASSGSTNP EEDFLGRRVA DDEDRTVEMS  60
SENSGPTRSR SEDNLEGEDD QEEEEDGAGN KGNKRKRKKY HRHTTDQIRH MEALFKETPH  120
PDEKQRQQLS KQLGLAPRQV KFWFQNRRTQ IKAIQERHEN SLLKAELEKL REENKAMRES  180
FSKANSSSCL NCGGGGGAGS PDDLLLENTK LKAELDKLRA ALGRTPYPLQ ASCSDDQQRR  240
VGSLELYTGV FALEKSRIVE IANRATLELQ KMATSGEPLW LRSLETGREI LNYDEYLKEF  300
PQDQTSSFHG RKTIEASRDV GIVFMDAHKL AQSFMDVEQW KEMFACLISK AVTVDVIRQG  360
EGPSRIDGAI QLMFGEMQLL TPVVPTREVY FVRSCRQLSP EKWAIVDVSV SMEEDNNAEK  420
EGSLLRCRKR PSGCIIEDTS NGHSKVTWVE HLDLSASTVQ PLFRSFVNTG LAFGAKHWVA  480
TLQLHCERLV FFMATNVPTK DSLGVTTLAG RKSVLKMAQR MTQSFYRAIA ASSYHQWNKI  540
TTKTGQDMRV SSRKNLHDPG EPTGVIVCAS SSLWLPVSPT LLFDFFRDET RRHEWDALSN  600
GAHVQSIVSL SKGQDRGNSV SIQTVKSREK STWVLQDSCT NSYESVVVYA PVDINTTQMV  660
IAGHDPSNIQ ILPCGFSIIP DGVESRQLVI SSAQEADRNT QGGSLLTMAL QTLVNQSPAA  720
KLNMESVESV TNLVSVTLHN IKRCLQIEDC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19498RKRKK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing trichomes.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009104428.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1882100.0KF188210.1 Brassica villosa BVGL2 (BVGL2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009104428.10.0PREDICTED: homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLM4CH520.0M4CH52_BRARP; Uncharacterized protein
STRINGBra003535.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM123702731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]