PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009104440.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

FAR1

Protein Properties

Length: 698aa MW: 79131.1 Da PI: 6.3718

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009104440.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.1	3e-23	96	180	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Yn+YA+++GF +r+++s ++++++e + ++C++eg+++ ++ + +++r+etrtgC+a++++++ + ++w+v++++leHnH++ XP_009104440.1 96 YYNSYARDLGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTVKEPN----STRRKETRTGCQAMIRLRLIELDRWKVDEVKLEHNHSFD 180 9*************************************998777....89999*****************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-20	96	180	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	9.2E-25	299	392	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.988	580	619	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.3E-6	593	618	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.9E-5	594	621	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 698 aa Download sequence Send to blast
MMSGNNVYTP PDQSLSPNSN LCITIEESSE QLVVVEQDGD DDLPIVGDNP PPDLHDCDGL 60 LDDFPPQSNE SEKCSTASPP PATGMEFDSY DDAYSYYNSY ARDLGFAIRV KSSWTKRNSK 120 EKRGAVLCCN CEGFKTVKEP NSTRRKETRT GCQAMIRLRL IELDRWKVDE VKLEHNHSFD 180 PERAHNSKSH KKTFGDGAAA ATKRKHEPPL DVQVRTIKLY RTNAVDSNGE TSDDHLHSSR 240 RLDLRGGGGF RVLQDFFFQS QLTNPNFFYS MDLGDDGCLR NVFWIESRAR AAYSHFSDVV 300 VFDTTCLSNA YELPLVAFVG INHHGDPILL GCGLVADQTP ETYVWLFRAW LTCVSGRPPL 360 TFVTEHCKSI QTAVSEVFPR AHHRLSLTHV LQCVVGVQDS ESFRMALNRV VYGYLKVEEF 420 EVAWEEMIIR FGLTNHETIR GLFQDREQWA PVYLKDTFLA GALTFRLGNA AAPFIFSSYV 480 HQQTSLRDFL EGYVSFLDKK YTNEALCDLQ SSKSIPELKT THPYESQMAK VLTKEIFTRF 540 QEEVVATSSC AGVTQVHSST GSASFSYVVK EREGEKVRDF EVVYETNAAA GIRCFCVCGG 600 FSFNGYQCRH VLLLLSHKGL EEIPSQYILQ RWRKDVKRLY VADFGSGGVD VMNPVQWYEH 660 LHRRAMQVVE QGMRSKEHCR VAWEAFKECV NRVTEKSS

Sequence ? help Back to Top

Protein Sequence Length: 698 aa Download sequence Send to blast

MMSGNNVYTP PDQSLSPNSN LCITIEESSE QLVVVEQDGD DDLPIVGDNP PPDLHDCDGL  60
LDDFPPQSNE SEKCSTASPP PATGMEFDSY DDAYSYYNSY ARDLGFAIRV KSSWTKRNSK  120
EKRGAVLCCN CEGFKTVKEP NSTRRKETRT GCQAMIRLRL IELDRWKVDE VKLEHNHSFD  180
PERAHNSKSH KKTFGDGAAA ATKRKHEPPL DVQVRTIKLY RTNAVDSNGE TSDDHLHSSR  240
RLDLRGGGGF RVLQDFFFQS QLTNPNFFYS MDLGDDGCLR NVFWIESRAR AAYSHFSDVV  300
VFDTTCLSNA YELPLVAFVG INHHGDPILL GCGLVADQTP ETYVWLFRAW LTCVSGRPPL  360
TFVTEHCKSI QTAVSEVFPR AHHRLSLTHV LQCVVGVQDS ESFRMALNRV VYGYLKVEEF  420
EVAWEEMIIR FGLTNHETIR GLFQDREQWA PVYLKDTFLA GALTFRLGNA AAPFIFSSYV  480
HQQTSLRDFL EGYVSFLDKK YTNEALCDLQ SSKSIPELKT THPYESQMAK VLTKEIFTRF  540
QEEVVATSSC AGVTQVHSST GSASFSYVVK EREGEKVRDF EVVYETNAAA GIRCFCVCGG  600
FSFNGYQCRH VLLLLSHKGL EEIPSQYILQ RWRKDVKRLY VADFGSGGVD VMNPVQWYEH  660
LHRRAMQVVE QGMRSKEHCR VAWEAFKECV NRVTEKSS

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009104440.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC232471	0.0	AC232471.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026K21, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009104440.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 8
Swissprot	Q9S793	0.0	FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBL	A0A397YMV2	0.0	A0A397YMV2_BRACM; Uncharacterized protein
STRING	Bo6g080100.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14233	20	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1-related sequence 8

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]