PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009104482.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 226aa MW: 25083.2 Da PI: 10.3671

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009104482.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.0002	68	90	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H XP_009104482.1 68 FSCNYCKRKFYSSQALGGHQNAH 90 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.29E-6	65	95	No hit	No description
PROSITE profile	PS50157	11.406	68	95	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	70	90	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009640	Biological Process	photomorphogenesis
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MNPSFKGDQE MLKTKKQGHQ DLELGLNLLP SATTSSELNL MDSFKTSSSS TSHHHGNHQE 60 HLEDPRVFSC NYCKRKFYSS QALGGHQNAH KRERTLAKRG QYYKMSLSSS SPSSAFAFGH 120 GSVSRFASMA SLQLHGSANN RSTLGIQAHS ASHNPLLGRQ TASLSHVFKH TIHQKPGTGK 180 MLPEKFHLEV ASSNNTIAPK LEMIGHFKSK EEDNNQFKKI DLTLKL

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in the shoot apex, including the apical meristem, developing leaves and developing vascular system. {ECO:0000269\|PubMed:10794528, ECO:0000305\|PubMed:8980531}.

Functional Description ? help Back to Top
Source	Description
UniProt	May play a role in the regulation of shoot development, downstream of photomorphogenic activation (Probable). Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development (PubMed:24808098). {ECO:0000269\|PubMed:24808098, ECO:0000305\|PubMed:8980531}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009104482.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by white light in dark-grown seedlings. {ECO:0000269\|PubMed:10794528}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC232476	0.0	AC232476.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB034F07, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009104482.1	1e-166	PREDICTED: zinc finger protein 1-like
Swissprot	Q42485	1e-119	ZFP1_ARATH; Zinc finger protein 1
TrEMBL	M4CH99	1e-156	M4CH99_BRARP; Uncharacterized protein
STRING	Bra003582.1-P	1e-156	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11858	16	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80730.1	1e-115	zinc-finger protein 1

Publications ? help Back to Top
Joseph MP, et al. The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. Plant Physiol., 2014. 165(3): p. 1203-1220 [PMID:24808098]