PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009104590.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 318aa    MW: 34826.1 Da    PI: 6.1758
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009104590.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.1e-20143192255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a++ a+ kl+g
  XP_009104590.1 143 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDTAAFKLRG 192
                     59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.25E-33142202No hitNo description
SuperFamilySSF541711.7E-23143201IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.8E-32143201IPR001471AP2/ERF domain
PROSITE profilePS5103223.393143200IPR001471AP2/ERF domain
SMARTSM003804.8E-39143206IPR001471AP2/ERF domain
PfamPF008473.4E-14144192IPR001471AP2/ERF domain
PRINTSPR003672.8E-11144155IPR001471AP2/ERF domain
PRINTSPR003672.8E-11166182IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MEAAMNLNSS RTFQQPDSFG GGGGELMEAL LPFIKSVSDS PSASASAFIN PAASAFPLPT  60
FPGYYPELTQ LFPYGSDLQQ TGSLIGLNNL SPTQIHQIQS QIHHNHPLPP TRSNLSPKPL  120
LMKQPGVAGS CFADGAPPKP AKLYRGVRQR HWGKWVAEIR LPRNRTRLWL GTFDTAEEAA  180
LAYDTAAFKL RGDFARLNFP NLRHDGSRIG GEFGEYKPLH STVDAKLEAI CKSMAETEKQ  240
EKTTKASKKR ASTAAVKAEE NSNSIGESPP VTEFVESAGS SPLSELTFAD AEEQPQWNET  300
FALEKYPSYE IDWDSILP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-20142200160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.41771e-155bud| flower| leaf| root| seed| silique
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in roots and leaves. Also detected in flowers and stems. {ECO:0000269|PubMed:9192694}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009104590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894141e-163AC189414.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB061K11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009104590.10.0PREDICTED: ethylene-responsive transcription factor RAP2-4-like
SwissprotQ8H1E41e-160RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLM4CHH60.0M4CHH6_BRARP; Uncharacterized protein
STRINGBra003659.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27162670
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.11e-128related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]