PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009104707.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HB-other
Protein Properties Length: 430aa    MW: 48851.8 Da    PI: 6.1453
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009104707.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.94.5e-102823191954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yp+++e+  LAk++gL+++qV +WF N R +
  XP_009104707.1 282 FEHflHPYPKESEKIMLAKQTGLSKNQVANWFINARVR 319
                     554458******************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005748.6E-5130258IPR006563POX domain
PfamPF075262.3E-12136208IPR006563POX domain
PROSITE profilePS5007111.872260323IPR001356Homeobox domain
CDDcd000862.80E-10263324No hitNo description
SMARTSM003895.9E-8263327IPR001356Homeobox domain
SuperFamilySSF466891.41E-17264332IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-27266329IPR009057Homeodomain-like
PfamPF059205.0E-18280319IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MSVYYQTNVG MQSLYQKPIY LNEQQQQQQA SSSSAGGGLE VPNSGGSVQD EMLFIPPTTS  60
AGLNGSVTVS SNDLSFHGGG LSLSLGNQIQ YHYQNQLNYN PSLSNENGKS PSSGYINGVG  120
LYNNYRYETT GFVSSVLRSP YLKPTQLLLD EVVSVKKDSN KKIKNNDDKG QDFSENNTYN  180
EELSSSERQE LQSKKNKLLT VVNQVDQRDA LKEQIQVIRG KLGEDKESCE EHGERIPRLR  240
YLDQRLRQQR ALHQQLGMVR PSWRPQRGLP ENSVSILCAW LFEHFLHPYP KESEKIMLAK  300
QTGLSKNQVA NWFINARVRL WKPMIEEMYK EEFGDSSSEL LSNSNQDNNK KMQETSQFKH  360
EDSSSSQQQS HENNNVPYTS DADRATSGDY DSLMNYHQGF GVDDYNRYIG LGNQQDGRFS  420
NPHQLHDFVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A2e-14269327563Homeobox protein Meis2
4xrm_B2e-14269327563Homeobox protein Meis2
4xrs_A1e-14269326158Homeobox protein Meis1
4xrs_B1e-14269326158Homeobox protein Meis1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.288261e-45leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:16513846}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009104707.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3530931e-161AF353093.1 Arabidopsis thaliana BEL1-like homeodomain 3 (BLH3) mRNA, complete cds.
GenBankAY0625451e-161AY062545.1 Arabidopsis thaliana Similar to homeodomain proteins (At1g75410; F1B16.6) mRNA, complete cds.
GenBankAY0852781e-161AY085278.1 Arabidopsis thaliana clone 142443 mRNA, complete sequence.
GenBankAY5984521e-161AY598452.1 Arabidopsis thaliana BEL1-like homeodomain 3 protein mRNA, complete cds.
GenBankBT0001331e-161BT000133.1 Arabidopsis thaliana Similar to homeodomain proteins (At1g75410) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009104707.10.0PREDICTED: BEL1-like homeodomain protein 3 isoform X2
SwissprotQ9FWS90.0BLH3_ARATH; BEL1-like homeodomain protein 3
TrEMBLA0A397YNG20.0A0A397YNG2_BRACM; Uncharacterized protein
TrEMBLM4CHS00.0M4CHS0_BRARP; Uncharacterized protein
STRINGBra003753.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75410.21e-148BEL1-like homeodomain 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]