PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009104773.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 470aa    MW: 54699.9 Da    PI: 4.6722
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009104773.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00075441460221
                     EETTTTEEESSHHHHHHHHH CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                     kC+ Cg+ F ++  L +H+ 
  XP_009104773.1 441 KCGRCGEKFESRTKLFKHLA 460
                     7*****************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.38E-13196244No hitNo description
SMARTSM004512.3E-5202236IPR003604Zinc finger, U1-type
SMARTSM003553.2205229IPR015880Zinc finger, C2H2-like
PfamPF121711.1E-10205230IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280207229IPR007087Zinc finger, C2H2
SMARTSM003553.2440464IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.411440469IPR007087Zinc finger, C2H2
PROSITE patternPS000280442464IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MSGGTVPNLL PFFSTKVYSG YSDTWKGFYK VYSDVFNSVY LNEVNFARKL GLGMETPPVM  60
GSLESPYAQV KEFYSYWLGF RTVMDFCWVD EFDVMSEPDG VIRRKMKEEN DEVRKKAKRE  120
YNESVRSLAA FVKKLDKRMV DMMVMKRIEM EVKERERERK EKMGKVRWER AMNYKEPDWA  180
KGEDGGFSVV EEDDSDDNDD DGMVLYCIVC SKNFKTEKQW KNHEQSKKHK EIVAELRVEA  240
PETETVEELQ EKIQDGFNID EAEAEEKDVE EEVVGEADET DDEFVMTEED VKGSSESEDE  300
DDEMRLLKKM VSEQKNKLKN VVSREEDEVV VDIERTKQNT DDANIVELNT YDNVKDEAHS  360
MENDNKKITG RRRRSKKDKD KNNLGGLMEK SSEADNTQDR NGDMEEFHAE TFEESKKVQR  420
SKTSTRGMTS EGTSKKAFYN KCGRCGEKFE SRTKLFKHLA DTDHATVKSR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102115RRKMKEENDEVRKK
2370377RRRRSKKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009104773.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0205793e-41AC020579.5 Arabidopsis thaliana chromosome 1 BAC F1O17 genomic sequence, complete sequence.
GenBankCP0026843e-41CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009104773.10.0PREDICTED: DNAJ protein JJJ1 homolog
SwissprotQ9C9111e-166JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLM4CHX70.0M4CHX7_BRARP; Uncharacterized protein
STRINGBra003810.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88692230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.11e-134DNAJ heat shock N-terminal domain-containing protein