PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009104797.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family EIL
Protein Properties Length: 552aa    MW: 62533.7 Da    PI: 5.1117
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009104797.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3351.22e-107372471221
                     XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
            EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWW 95 
                     e+l++rmwkd+++lkr+ker+k      +    +++ +k +eqa+rkkmsraQDgiLkYMlk mevc+++GfvYgiipekgkpv+g+sd++raWW
  XP_009104797.1  37 EDLERRMWKDRVRLKRIKERTKIVS---S--QTKETPKKVSEQAQRKKMSRAQDGILKYMLKLMEVCKVRGFVYGIIPEKGKPVSGSSDNIRAWW 126
                     89******************99733...2..34567889******************************************************** PP

                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT--TT- CS
            EIN3  96 kekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelglskdq 190
                     kekv+fd+ngpaai+ky+ ++l++++++++    ++++  l++lqD+tlgSLLs+lmqhcdppqr++plekg++pPWWP+G+e+ww +lgl+k q
  XP_009104797.1 127 KEKVKFDKNGPAAIAKYEEECLAFGKSDGD----RNSQFVLQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGMPPPWWPSGDEEWWVKLGLAKGQ 217
                     *************************88888....67899******************************************************** PP

                     -.-----GGG--HHHHHHHHHHHHHHTGGGH CS
            EIN3 191 gtppykkphdlkkawkvsvLtavikhmspti 221
                     + ppykkphdlkk+wkv+vLtavi+hmsp+i
  XP_009104797.1 218 S-PPYKKPHDLKKMWKVGVLTAVINHMSPDI 247
                     *.9**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048733.3E-11037254No hitNo description
Gene3DG3DSA:1.10.3180.101.6E-52157256IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167681.96E-45161257IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MSGGDLPISV TDIRMENEPD DLAVAEIDVS DEEIDAEDLE RRMWKDRVRL KRIKERTKIV  60
SSQTKETPKK VSEQAQRKKM SRAQDGILKY MLKLMEVCKV RGFVYGIIPE KGKPVSGSSD  120
NIRAWWKEKV KFDKNGPAAI AKYEEECLAF GKSDGDRNSQ FVLQDLQDAT LGSLLSSLMQ  180
HCDPPQRKYP LEKGMPPPWW PSGDEEWWVK LGLAKGQSPP YKKPHDLKKM WKVGVLTAVI  240
NHMSPDIAWL AVLNQEESLT PQPSSDNGAS NVTETHRRGN NAERRRKTVI NSDSEYDVDG  300
REEASGSVSS KDNRRKQTQK EQPTATSQTV RDQDKSEKHR RRKRPRRTVN GQEEEQPETE  360
QRIVLPDMNH VDAPLLEYNI NGTTHHQEEG VLGPEENSLE LVIPEFNNNY TYLPPVNGQA  420
MIPVEERPML YGPNTNQVLQ FGSGYNFYNP SAVFVHNQEE DLIHTQIEMN PQAPPHNNGF  480
EAPGGVLQPH NLLGNEDSVT GRDLPPQFQS DQDKLLDSNI LSPFSDLAFD SNTFFSGFDS  540
YGVDDHLSWF GA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wij_A1e-571602689140ETHYLENE-INSENSITIVE3-like 3 protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the ethylene response pathway. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009104797.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532450.0AK353245.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-23-B16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009104797.10.0PREDICTED: ETHYLENE INSENSITIVE 3-like 3 protein
SwissprotO231160.0EIL3_ARATH; ETHYLENE INSENSITIVE 3-like 3 protein
TrEMBLM4CHZ80.0M4CHZ8_BRARP; Uncharacterized protein
STRINGBra003831.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46582548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73730.10.0ETHYLENE-INSENSITIVE3-like 3
Publications ? help Back to Top
  1. Frerigmann H,Gigolashvili T
    Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency.
    Front Plant Sci, 2014. 5: p. 626
    [PMID:25426131]
  2. Zheng ZL,Zhang B,Leustek T
    Transceptors at the boundary of nutrient transporters and receptors: a new role for Arabidopsis SULTR1;2 in sulfur sensing.
    Front Plant Sci, 2014. 5: p. 710
    [PMID:25566284]
  3. Panda SK,Sunkar R
    Nutrient- and other stress-responsive microRNAs in plants: Role for thiol-based redox signaling.
    Plant Signal Behav, 2015. 10(4): p. e1010916
    [PMID:25912823]
  4. Wawrzyńska A,Sirko A
    EIN3 interferes with the sulfur deficiency signaling in Arabidopsis thaliana through direct interaction with the SLIM1 transcription factor.
    Plant Sci., 2016. 253: p. 50-57
    [PMID:27968996]